Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_03s0132g00020.t01 | Wine grape | nucleus | 46.88 | 25.64 |
| HORVU1Hr1G095140.2 | Barley | nucleus | 53.12 | 22.37 |
| VIT_06s0009g03080.t01 | Wine grape | nucleus | 28.12 | 16.07 |
| Solyc09g009030.2.1 | Tomato | nucleus | 56.25 | 13.38 |
| PGSC0003DMT400006927 | Potato | nucleus | 56.25 | 13.38 |
| PGSC0003DMT400021644 | Potato | nucleus | 57.81 | 12.89 |
| TraesCS3B01G450400.1 | Wheat | nucleus | 71.88 | 12.17 |
| Solyc10g085560.1.1 | Tomato | nucleus | 57.81 | 12.05 |
| GSMUA_Achr8P01440_001 | Banana | extracellular | 40.62 | 10.92 |
| KRH67840 | Soybean | nucleus | 48.44 | 10.76 |
| VIT_08s0007g03940.t01 | Wine grape | nucleus | 50.0 | 10.74 |
| KRG96126 | Soybean | nucleus | 46.88 | 10.24 |
| Zm00001d012092_P001 | Maize | nucleus | 45.31 | 10.18 |
| KRH26575 | Soybean | nucleus | 48.44 | 10.1 |
| VIT_06s0061g01240.t01 | Wine grape | nucleus | 54.69 | 9.92 |
| KRH30517 | Soybean | nucleus | 43.75 | 9.69 |
| KRH25160 | Soybean | nucleus | 42.19 | 9.03 |
| EES04076 | Sorghum | nucleus | 37.5 | 8.66 |
| PGSC0003DMT400005672 | Potato | nucleus | 29.69 | 6.55 |
| HORVU3Hr1G092390.4 | Barley | nucleus, plastid | 42.19 | 6.38 |
| Solyc11g066840.1.1 | Tomato | nucleus | 28.12 | 5.68 |
| PGSC0003DMT400068253 | Potato | cytosol | 29.69 | 5.34 |
| Zm00001d042433_P001 | Maize | nucleus | 20.31 | 5.28 |
| Zm00001d012095_P001 | Maize | cytosol, nucleus, plastid | 10.94 | 4.58 |
| AT2G27840.3 | Thale cress | cytosol | 12.5 | 3.94 |
| KRH22734 | Soybean | nucleus | 9.38 | 3.11 |
| CDX77140 | Canola | nucleus | 9.38 | 2.79 |
| Bra034373.1-P | Field mustard | nucleus | 7.81 | 2.33 |
| TraesCS3D01G410400.1 | Wheat | nucleus | 15.62 | 2.31 |
| CDY30525 | Canola | cytosol, nucleus, plastid | 6.25 | 1.82 |
Protein Annotations
| EnsemblPlants:HORVU3Hr1G092400.1 | EnsemblPlantsGene:HORVU3Hr1G092400 | Gene3D:3.30.160.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR013087 | InterPro:Znf_C2H2_type | PANTHER:PTHR31802 | PANTHER:PTHR31802:SF8 | PFscan:PS50157 | ScanProsite:PS00028 |
| UniParc:UPI000B487761 | UniProt:A0A287MA92 | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chrchr3H:-:637931615..637932299
Molecular Weight (calculated)
6690.7 Da
IEP (calculated)
10.078
GRAVY (calculated)
-1.161
Length
64 amino acids
Sequence
(BLAST)
(BLAST)
1: ETPSGQDTDD KKAVHVATPH PAKQAGKQNG KSTKYVGGSH ACKSCSRTFG SDSALKSHEK AKHA
001: MEFWGVEVKN GKPLHLDPGL DRLVHISQVA LGESKNNVTE PIQLYVTVGS DKLLIGTLSH EKFPQLSTEI VLERNFALSH TWKNGSVFFS GYKVDASDPE
101: PEDLIDDQLE AAGFKAAPKS AAKQVNFQLP NEDVKAKQDD DADGSEEDSS DDDDSENSGD EEEEKVTAES DSEEDDSSDD EEDDSSEEET PKKPEEPKKR
201: SAEPNSSKNP ASNKKAKFVT PQKTDSKKPH VHVATPHPSK QAGKNSGGGS TGETSKQQQT PKSAGAFGCK SCTRTFTSEM GLQSHTKAKH SAAA
101: PEDLIDDQLE AAGFKAAPKS AAKQVNFQLP NEDVKAKQDD DADGSEEDSS DDDDSENSGD EEEEKVTAES DSEEDDSSDD EEDDSSEEET PKKPEEPKKR
201: SAEPNSSKNP ASNKKAKFVT PQKTDSKKPH VHVATPHPSK QAGKNSGGGS TGETSKQQQT PKSAGAFGCK SCTRTFTSEM GLQSHTKAKH SAAA
Arabidopsis Description
HDT3HDT3 [Source:UniProtKB/TrEMBL;Acc:A0A178UP12]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.