Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 1
- plastid 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Bra034373.1-P | Field mustard | nucleus | 85.91 | 87.91 |
CDX77140 | Canola | nucleus | 80.91 | 82.79 |
Os01t0909150-00 | Rice | cytosol | 20.45 | 37.82 |
AT2G27840.3 | Thale cress | cytosol | 33.64 | 36.45 |
CDY59279 | Canola | cytosol | 23.18 | 31.48 |
Zm00001d012095_P001 | Maize | cytosol, nucleus, plastid | 21.82 | 31.37 |
CDY09153 | Canola | cytosol | 21.36 | 27.01 |
CDY09155 | Canola | cytosol | 22.27 | 26.63 |
EES04076 | Sorghum | nucleus | 31.82 | 25.27 |
TraesCS1D01G454400.2 | Wheat | nucleus | 35.0 | 24.76 |
CDX88790 | Canola | nucleus | 30.0 | 24.0 |
Zm00001d012092_P001 | Maize | nucleus | 30.45 | 23.51 |
CDX92341 | Canola | nucleus | 27.73 | 23.37 |
CDY35706 | Canola | nucleus | 31.82 | 23.33 |
CDY26948 | Canola | nucleus | 27.27 | 23.08 |
EES19871 | Sorghum | nucleus | 30.91 | 22.74 |
TraesCS1A01G445700.4 | Wheat | nucleus | 31.36 | 22.33 |
EES20078 | Sorghum | nucleus | 30.91 | 22.15 |
Zm00001d038832_P002 | Maize | nucleus | 30.0 | 22.0 |
Zm00001d014548_P002 | Maize | cytosol | 19.09 | 21.88 |
CDX71005 | Canola | nucleus | 27.27 | 21.82 |
CDY09158 | Canola | plastid | 33.64 | 21.26 |
Zm00001d042433_P001 | Maize | nucleus | 23.18 | 20.73 |
Zm00001d011139_P005 | Maize | cytosol | 28.64 | 20.26 |
KXG20698 | Sorghum | nucleus | 25.45 | 17.89 |
GSMUA_Achr8P01440_001 | Banana | extracellular | 19.09 | 17.65 |
KXG33961 | Sorghum | nucleus | 21.36 | 17.47 |
CDY10359 | Canola | nucleus | 27.27 | 16.85 |
HORVU1Hr1G095140.2 | Barley | nucleus | 10.91 | 15.79 |
CDX70287 | Canola | nucleus | 12.73 | 14.29 |
TraesCS3B01G450400.1 | Wheat | nucleus | 24.09 | 14.02 |
TraesCS3B01G450300.1 | Wheat | nucleus | 18.18 | 10.44 |
TraesCS3D01G410300.2 | Wheat | nucleus | 17.27 | 10.44 |
TraesCS3A01G415200.1 | Wheat | nucleus | 18.64 | 10.17 |
TraesCS3D01G410400.1 | Wheat | nucleus | 19.09 | 9.72 |
HORVU3Hr1G092390.4 | Barley | nucleus, plastid | 18.18 | 9.46 |
CDY59274 | Canola | plastid | 18.18 | 9.3 |
HORVU3Hr1G092400.1 | Barley | nucleus | 1.82 | 6.25 |
Protein Annotations
EnsemblPlants:CDY30525 | EnsemblPlantsGene:GSBRNA2T00045245001 | Gene3D:2.60.120.340 | ncoils:Coil | PANTHER:PTHR31802 | PANTHER:PTHR31802:SF8 |
ProteinID:CDY30525 | ProteinID:CDY30525.1 | SEG:seg | UniParc:UPI0004EF1312 | UniProt:A0A078GVN7 | MapMan:12.3.2.2 |
Description
BnaA04g16080DBnaA04g16080D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GVN7]
Coordinates
chrLK032254:-:234940..236511
Molecular Weight (calculated)
24206.1 Da
IEP (calculated)
4.497
GRAVY (calculated)
-0.883
Length
220 amino acids
Sequence
(BLAST)
(BLAST)
001: MCAYVVGIEI KPGKPTKVEQ EDGYMIHVSQ IAIGEFNKVG DKTVQVFVKV GGDDKQKLLI GNLSQKVPQV LLDLLFEQDF EVSHECKSSS VYLLGYKTVD
101: PLDGEVNSDF DSEDEDIPMD MFQRELEKSK ANGLNGQKAN LEDDESDSDE MGSDEDEDED DSEEEEDTPV KVAPPSKKRP NGGAMNNKTV ASKKAKVANQ
201: QGHKGHKGHK CGGVHPPKRN
101: PLDGEVNSDF DSEDEDIPMD MFQRELEKSK ANGLNGQKAN LEDDESDSDE MGSDEDEDED DSEEEEDTPV KVAPPSKKRP NGGAMNNKTV ASKKAKVANQ
201: QGHKGHKGHK CGGVHPPKRN
001: MEFWGIEIKP GKPFKVIQKD GFMVHASQVT LGDVEKVKKD ETFAVYVKIG DDENGFMIGN LSQKFPQFSI DLYLGHEFEI SHNSTSSVYL IGYRTFDAFD
101: ELDEEIDSDS ELDEYMEQQI AALPQNEINP EEDDESDSDE MGLDEDDDSS DEEDVEAEAP LKVAPPSKKM PNGAFEIAKG GKKNKSSGGK KRCPFPCGPS
201: CKK
101: ELDEEIDSDS ELDEYMEQQI AALPQNEINP EEDDESDSDE MGLDEDDDSS DEEDVEAEAP LKVAPPSKKM PNGAFEIAKG GKKNKSSGGK KRCPFPCGPS
201: CKK
Arabidopsis Description
HDT4Histone deacetylase HDT4 [Source:UniProtKB/Swiss-Prot;Acc:Q9M4T3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.