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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 1
  • mitochondrion 1
  • plastid 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra034373.1-P Field mustard nucleus 85.91 87.91
CDX77140 Canola nucleus 80.91 82.79
Os01t0909150-00 Rice cytosol 20.45 37.82
AT2G27840.3 Thale cress cytosol 33.64 36.45
CDY59279 Canola cytosol 23.18 31.48
Zm00001d012095_P001 Maize cytosol, nucleus, plastid 21.82 31.37
CDY09153 Canola cytosol 21.36 27.01
CDY09155 Canola cytosol 22.27 26.63
EES04076 Sorghum nucleus 31.82 25.27
TraesCS1D01G454400.2 Wheat nucleus 35.0 24.76
CDX88790 Canola nucleus 30.0 24.0
Zm00001d012092_P001 Maize nucleus 30.45 23.51
CDX92341 Canola nucleus 27.73 23.37
CDY35706 Canola nucleus 31.82 23.33
CDY26948 Canola nucleus 27.27 23.08
EES19871 Sorghum nucleus 30.91 22.74
TraesCS1A01G445700.4 Wheat nucleus 31.36 22.33
EES20078 Sorghum nucleus 30.91 22.15
Zm00001d038832_P002 Maize nucleus 30.0 22.0
Zm00001d014548_P002 Maize cytosol 19.09 21.88
CDX71005 Canola nucleus 27.27 21.82
CDY09158 Canola plastid 33.64 21.26
Zm00001d042433_P001 Maize nucleus 23.18 20.73
Zm00001d011139_P005 Maize cytosol 28.64 20.26
KXG20698 Sorghum nucleus 25.45 17.89
GSMUA_Achr8P01440_001 Banana extracellular 19.09 17.65
KXG33961 Sorghum nucleus 21.36 17.47
CDY10359 Canola nucleus 27.27 16.85
HORVU1Hr1G095140.2 Barley nucleus 10.91 15.79
CDX70287 Canola nucleus 12.73 14.29
TraesCS3B01G450400.1 Wheat nucleus 24.09 14.02
TraesCS3B01G450300.1 Wheat nucleus 18.18 10.44
TraesCS3D01G410300.2 Wheat nucleus 17.27 10.44
TraesCS3A01G415200.1 Wheat nucleus 18.64 10.17
TraesCS3D01G410400.1 Wheat nucleus 19.09 9.72
HORVU3Hr1G092390.4 Barley nucleus, plastid 18.18 9.46
CDY59274 Canola plastid 18.18 9.3
HORVU3Hr1G092400.1 Barley nucleus 1.82 6.25
Protein Annotations
EnsemblPlants:CDY30525EnsemblPlantsGene:GSBRNA2T00045245001Gene3D:2.60.120.340ncoils:CoilPANTHER:PTHR31802PANTHER:PTHR31802:SF8
ProteinID:CDY30525ProteinID:CDY30525.1SEG:segUniParc:UPI0004EF1312UniProt:A0A078GVN7MapMan:12.3.2.2
Description
BnaA04g16080DBnaA04g16080D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GVN7]
Coordinates
chrLK032254:-:234940..236511
Molecular Weight (calculated)
24206.1 Da
IEP (calculated)
4.497
GRAVY (calculated)
-0.883
Length
220 amino acids
Sequence
(BLAST)
001: MCAYVVGIEI KPGKPTKVEQ EDGYMIHVSQ IAIGEFNKVG DKTVQVFVKV GGDDKQKLLI GNLSQKVPQV LLDLLFEQDF EVSHECKSSS VYLLGYKTVD
101: PLDGEVNSDF DSEDEDIPMD MFQRELEKSK ANGLNGQKAN LEDDESDSDE MGSDEDEDED DSEEEEDTPV KVAPPSKKRP NGGAMNNKTV ASKKAKVANQ
201: QGHKGHKGHK CGGVHPPKRN
Best Arabidopsis Sequence Match ( AT2G27840.3 )
(BLAST)
001: MEFWGIEIKP GKPFKVIQKD GFMVHASQVT LGDVEKVKKD ETFAVYVKIG DDENGFMIGN LSQKFPQFSI DLYLGHEFEI SHNSTSSVYL IGYRTFDAFD
101: ELDEEIDSDS ELDEYMEQQI AALPQNEINP EEDDESDSDE MGLDEDDDSS DEEDVEAEAP LKVAPPSKKM PNGAFEIAKG GKKNKSSGGK KRCPFPCGPS
201: CKK
Arabidopsis Description
HDT4Histone deacetylase HDT4 [Source:UniProtKB/Swiss-Prot;Acc:Q9M4T3]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.