CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 3
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P07580_001	Banana	cytosol	8.14	30.97
CDY59279	Canola	cytosol	11.4	30.25
CDY09155	Canola	cytosol	12.79	29.89
CDX71005	Canola	nucleus	17.44	27.27
CDX88790	Canola	nucleus	16.98	26.55
CDY09153	Canola	cytosol	10.0	24.71
CDY26948	Canola	nucleus	13.95	23.08
CDY35706	Canola	nucleus	15.81	22.67
CDY09158	Canola	plastid	17.91	22.13
CDX92341	Canola	nucleus	13.26	21.84
AT5G22650.1	Thale cress	nucleus	15.12	21.24
PGSC0003DMT400005672	Potato	nucleus	13.49	20.0
CDX77140	Canola	nucleus	9.77	19.53
GSMUA_Achr3P22840_001	Banana	nucleus	14.19	19.37
Solyc11g066840.1.1	Tomato	nucleus	14.19	19.24
VIT_06s0061g01240.t01	Wine grape	nucleus	15.58	18.98
CDY10359	Canola	nucleus	15.12	18.26
CDY30525	Canola	cytosol, nucleus, plastid	9.3	18.18
GSMUA_Achr10P...	Banana	plastid	14.42	16.58
PGSC0003DMT400068253	Potato	cytosol	13.49	16.29
CDX70287	Canola	nucleus	6.98	15.31
VIT_03s0132g00020.t01	Wine grape	nucleus	3.26	11.97
VIT_06s0009g03080.t01	Wine grape	nucleus	2.79	10.71

Protein Annotations

EnsemblPlants:CDY59274	EnsemblPlantsGene:GSBRNA2T00025839001	Gene3D:3.30.70.330	GO:A0A078J7R1	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf	PANTHER:PTHR31802	PANTHER:PTHR31802:SF8
ProteinID:CDY59274	ProteinID:CDY59274.1	SUPFAM:SSF54928	UniParc:UPI0004EDBFF8	UniProt:A0A078J7R1	MapMan:35.2

Description

BnaCnng34560DBnaCnng34560D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J7R1]

Coordinates

chrLK033746:-:718..6120

Molecular Weight (calculated)

48856.6 Da

IEP (calculated)

7.284

GRAVY (calculated)

-0.366

Length

430 amino acids

Sequence
(BLAST)

001: MLEPSGLGSL RFQNSSRKTT NGAVYGVKRP DSLLPLSQLA ETLYSPFLSS SRTPTMEFWG KDKLLSVSYL GLCQLIFIKM SSLSHMFRVT KKKERYNLFT
101: HVFGSLVYDA SLRKSRRGVS ALLYATVDDK KLLLGTLSQD ISFDHLLFDR EFELSHTLER GSVHFTGYKS KVSTKSKPAS DDDDEEAFVE MVCSAKQIKD
201: LMYPSDPDDL LLTKQDLENL VPEKSTKVLT TAHSYPREDP DLTDSDEDFL SPTLLIMNID MDSTKADITN FFKDNCSLQV RIVQLVSTVD EESKKTKLEA
301: HIEFRSNQEL KLARKLNGHL MGKSRIFFDR TLGSLHVFFI SGFNRDLRED DLKRQIEKKF KTCGALKKII LPKEQENLLG YVRFGYIVMN TTSEETVLSM
401: DSSIMGDEAI SVKSVNPRGR VFKALMESEN

Best Arabidopsis Sequence Match ( AT5G22650.2 )
(BLAST)

001: MEFWGVAVTP KNATKVTPEE DSLVHISQAS LDCTVKSGES VVLSVTVGGA KLVIGTLSQD KFPQISFDLV FDKEFELSHS GTKANVHFIG YKSPNIEQDD
101: FTSSDDEDVP EAVPAPAPTA VTANGNAGAA VVKADTKPKA KPAEVKPAEE KPESDEEDES DDEDESEEDD DSEKGMDVDE DDSDDDEEED SEDEEEEETP
201: KKPEPINKKR PNESVSKTPV SGKKAKPAAA PASTPQKTEK KKGGHTATPH PAKKGGKSPV NANQSPKSGG QSSGGNNNKK PFNSGKQFGG SNNKGSNKGK
301: GKGRA

Arabidopsis Description

HDT2Histone deacetylase HDT2 [Source:UniProtKB/Swiss-Prot;Acc:Q56WH4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.