Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os05t0597100-01 | Rice | nucleus | 41.16 | 43.1 |
| EES20078 | Sorghum | nucleus | 41.8 | 42.35 |
| Zm00001d038832_P002 | Maize | nucleus | 40.84 | 42.33 |
| Zm00001d012095_P001 | Maize | cytosol, nucleus, plastid | 19.94 | 40.52 |
| TraesCS1D01G454400.2 | Wheat | nucleus | 37.94 | 37.94 |
| TraesCS1A01G445700.4 | Wheat | nucleus | 34.73 | 34.95 |
| Solyc09g009030.2.1 | Tomato | nucleus | 29.9 | 34.57 |
| PGSC0003DMT400006927 | Potato | nucleus | 29.9 | 34.57 |
| KRH22734 | Soybean | nucleus | 20.58 | 33.16 |
| PGSC0003DMT400021644 | Potato | nucleus | 29.9 | 32.4 |
| VIT_08s0007g03940.t01 | Wine grape | nucleus | 30.55 | 31.88 |
| Zm00001d012092_P001 | Maize | nucleus | 28.94 | 31.58 |
| Solyc11g066840.1.1 | Tomato | nucleus | 31.51 | 30.91 |
| KRG96126 | Soybean | nucleus | 28.62 | 30.38 |
| Solyc10g085560.1.1 | Tomato | nucleus | 29.9 | 30.29 |
| Bra034373.1-P | Field mustard | nucleus | 20.9 | 30.23 |
| PGSC0003DMT400005672 | Potato | nucleus | 27.97 | 30.0 |
| KRH67840 | Soybean | nucleus | 27.65 | 29.86 |
| KRH25160 | Soybean | nucleus | 28.62 | 29.77 |
| Zm00001d042433_P001 | Maize | nucleus | 23.47 | 29.67 |
| KRH30517 | Soybean | nucleus | 27.33 | 29.41 |
| CDY30525 | Canola | cytosol, nucleus, plastid | 20.26 | 28.64 |
| KRH26575 | Soybean | nucleus | 27.97 | 28.34 |
| CDX77140 | Canola | nucleus | 19.29 | 27.91 |
| AT2G27840.3 | Thale cress | cytosol | 17.36 | 26.6 |
| Zm00001d014548_P002 | Maize | cytosol | 16.4 | 26.56 |
| VIT_06s0061g01240.t01 | Wine grape | nucleus | 28.62 | 25.21 |
| PGSC0003DMT400068253 | Potato | cytosol | 27.65 | 24.16 |
| HORVU1Hr1G095140.2 | Barley | nucleus | 9.32 | 19.08 |
| VIT_03s0132g00020.t01 | Wine grape | nucleus | 7.07 | 18.8 |
| VIT_06s0009g03080.t01 | Wine grape | nucleus | 6.43 | 17.86 |
| GSMUA_Achr8P01440_001 | Banana | extracellular | 11.9 | 15.55 |
Protein Annotations
| EnsemblPlants:Zm00001d011139_P005 | EnsemblPlants:Zm00001d011139_T005 | EnsemblPlantsGene:Zm00001d011139 | Gene3D:2.60.120.340 | PANTHER:PTHR31802 | PANTHER:PTHR31802:SF8 |
| ProteinID:AQK95840.1 | SEG:seg | UniParc:UPI0008458322 | UniProt:A0A1D6FWU4 | MapMan:12.3.2.2 | : |
Description
histone deacetylase102 histone deacetylase102
Coordinates
chr8:+:140120557..140123091
Molecular Weight (calculated)
34689.2 Da
IEP (calculated)
4.702
GRAVY (calculated)
-0.804
Length
311 amino acids
Sequence
(BLAST)
(BLAST)
001: MEFWGLEVKP GSTVKCEPGH GFILHVSQAA LGESKKSDSA LMYVKVDDKK LAIGTLSIDK YPQIQFDLVF NKEFELSHTS KTTSVFFSGK ADGKEEQKNQ
101: EKAVAATASK SSLGLEKKSK DDSDDSDEDE SDDSDEDDSD DSDEGEGLSP DEGDDDSSDE DDTSDDDEEE TPTPKKPEAG KKRGAENALK TPLSDKKAKV
201: ATPPAQKTGL FVVKYLQSWG YLLWNCCYEF VTCILYFFLQ VARRVPPMWQ LHTQQKARPL QTMTNQRRSL QNLVGQSLAN HAARHSIVRW LCRLTPRRSM
301: GPNELQVQLS P
101: EKAVAATASK SSLGLEKKSK DDSDDSDEDE SDDSDEDDSD DSDEGEGLSP DEGDDDSSDE DDTSDDDEEE TPTPKKPEAG KKRGAENALK TPLSDKKAKV
201: ATPPAQKTGL FVVKYLQSWG YLLWNCCYEF VTCILYFFLQ VARRVPPMWQ LHTQQKARPL QTMTNQRRSL QNLVGQSLAN HAARHSIVRW LCRLTPRRSM
301: GPNELQVQLS P
001: MEFWGIEVKS GKPVTVTPEE GILIHVSQAS LGECKNKKGE FVPLHVKVGN QNLVLGTLST ENIPQLFCDL VFDKEFELSH TWGKGSVYFV GYKTPNIEPQ
101: GYSEEEEEEE EEVPAGNAAK AVAKPKAKPA EVKPAVDDEE DESDSDGMDE DDSDGEDSEE EEPTPKKPAS SKKRANETTP KAPVSAKKAK VAVTPQKTDE
201: KKKGGKAANQ SPKSASQVSC GSCKKTFNSG NALESHNKAK HAAAK
101: GYSEEEEEEE EEVPAGNAAK AVAKPKAKPA EVKPAVDDEE DESDSDGMDE DDSDGEDSEE EEPTPKKPAS SKKRANETTP KAPVSAKKAK VAVTPQKTDE
201: KKKGGKAANQ SPKSASQVSC GSCKKTFNSG NALESHNKAK HAAAK
Arabidopsis Description
HDT1Histone deacetylase HDT1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FVE6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.