Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400021644 | Potato | nucleus | 88.6 | 94.77 |
| Solyc09g009030.2.1 | Tomato | nucleus | 60.26 | 68.77 |
| HORVU3Hr1G092400.1 | Barley | nucleus | 12.05 | 57.81 |
| KRH67840 | Soybean | nucleus | 47.88 | 51.04 |
| VIT_08s0007g03940.t01 | Wine grape | nucleus | 49.51 | 51.01 |
| GSMUA_Achr8P07580_001 | Banana | cytosol | 18.24 | 49.56 |
| KRG96126 | Soybean | nucleus | 46.58 | 48.81 |
| Os05t0597100-01 | Rice | nucleus | 43.65 | 45.12 |
| TraesCS1D01G454400.2 | Wheat | nucleus | 44.95 | 44.37 |
| GSMUA_Achr3P22840_001 | Banana | nucleus | 45.28 | 44.13 |
| AT5G03740.1 | Thale cress | nucleus | 40.39 | 42.18 |
| EES19871 | Sorghum | nucleus | 41.04 | 42.14 |
| EES04076 | Sorghum | nucleus | 37.78 | 41.88 |
| Zm00001d012095_P001 | Maize | cytosol, nucleus, plastid | 20.52 | 41.18 |
| TraesCS1A01G445700.4 | Wheat | nucleus | 41.37 | 41.1 |
| Zm00001d012092_P001 | Maize | nucleus | 38.11 | 41.05 |
| EES20078 | Sorghum | nucleus | 41.04 | 41.04 |
| Zm00001d038832_P002 | Maize | nucleus | 40.07 | 41.0 |
| HORVU1Hr1G095140.2 | Barley | nucleus | 20.2 | 40.79 |
| Os01t0909150-00 | Rice | cytosol | 15.31 | 39.5 |
| CDX70287 | Canola | nucleus | 23.78 | 37.24 |
| Solyc11g066840.1.1 | Tomato | nucleus | 36.81 | 35.65 |
| Zm00001d042433_P001 | Maize | nucleus | 27.69 | 34.55 |
| GSMUA_Achr10P... | Banana | plastid | 41.69 | 34.22 |
| CDY10359 | Canola | nucleus | 37.46 | 32.3 |
| Bra009513.1-P | Field mustard | nucleus, plastid | 36.48 | 31.11 |
| KXG20698 | Sorghum | nucleus | 31.6 | 30.99 |
| Zm00001d011139_P005 | Maize | cytosol | 30.29 | 29.9 |
| TraesCS3B01G450400.1 | Wheat | nucleus | 35.5 | 28.84 |
| KXG33961 | Sorghum | nucleus | 24.43 | 27.88 |
| Os01t0909100-01 | Rice | nucleus, peroxisome | 21.82 | 27.46 |
| TraesCS3D01G410300.2 | Wheat | nucleus | 29.32 | 24.73 |
| Zm00001d014548_P002 | Maize | cytosol | 14.98 | 23.96 |
| Os01t0909500-02 | Rice | cytosol | 18.24 | 23.73 |
| TraesCS3B01G450300.1 | Wheat | nucleus | 28.34 | 22.72 |
| TraesCS3A01G415200.1 | Wheat | nucleus | 28.99 | 22.08 |
| HORVU3Hr1G092390.4 | Barley | nucleus, plastid | 28.34 | 20.57 |
| TraesCS3D01G410400.1 | Wheat | nucleus | 19.87 | 14.12 |
Protein Annotations
| EnsemblPlants:Solyc10g085560.1.1 | EnsemblPlantsGene:Solyc10g085560.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | InterPro:IPR013087 |
| InterPro:Znf_C2H2_type | PANTHER:PTHR31802 | PANTHER:PTHR31802:SF8 | PFAM:PF13912 | PFscan:PS50157 | ScanProsite:PS00028 |
| SEG:seg | UniParc:UPI000276A8C7 | UniProt:K4D3Z0 | MapMan:12.3.2.2 | : | : |
Description
No Description!
Coordinates
chr10:-:64678518..64682208
Molecular Weight (calculated)
33655.6 Da
IEP (calculated)
4.488
GRAVY (calculated)
-0.857
Length
307 amino acids
Sequence
(BLAST)
(BLAST)
001: MEFWGAEVKS GQPLSVQPGD DMVLHLSQAS LGEVKKDKAS EPVCLSVTID GKKLVLGTLS LDKLPQQQFD LVFDRDFELS HNWKNGSVYF FGYKAANPFE
101: EYPFLFFYFL FVSLTTIVCD TEEDVDEVED ESDEEIPLSI ANNGKTEAKA SAKDSASTKQ KVRVIEFTKV DKAEDQDEST DESADEDDSM MGEDEEGDSD
201: EDQSDESEEE TPKKAEPSRK RPADSAAKTP VPDKKTKFLT PQKTDGKKGA VHVATPHPSK QAGKTPGNKP NQTPKSGGSL ACKTCNRTFG SENALESHSK
301: AKHSAGK
101: EYPFLFFYFL FVSLTTIVCD TEEDVDEVED ESDEEIPLSI ANNGKTEAKA SAKDSASTKQ KVRVIEFTKV DKAEDQDEST DESADEDDSM MGEDEEGDSD
201: EDQSDESEEE TPKKAEPSRK RPADSAAKTP VPDKKTKFLT PQKTDGKKGA VHVATPHPSK QAGKTPGNKP NQTPKSGGSL ACKTCNRTFG SENALESHSK
301: AKHSAGK
001: MEFWGVAVTP KNATKVTPEE DSLVHISQAS LDCTVKSGES VVLSVTVGGA KLVIGTLSQD KFPQISFDLV FDKEFELSHS GTKANVHFIG YKSPNIEQDD
101: FTSSDDEDVP EAVPAPAPTA VTANGNAGAA VVKADTKPKA KPAEVKPAEE KPESDEEDES DDEDESEEDD DSEKGMDVDE DDSDDDEEED SEDEEEEETP
201: KKPEPINKKR PNESVSKTPV SGKKAKPAAA PASTPQKTEK KKGGHTATPH PAKKGGKSPV NANQSPKSGG QSSGGNNNKK PFNSGKQFGG SNNKGSNKGK
301: GKGRA
101: FTSSDDEDVP EAVPAPAPTA VTANGNAGAA VVKADTKPKA KPAEVKPAEE KPESDEEDES DDEDESEEDD DSEKGMDVDE DDSDDDEEED SEDEEEEETP
201: KKPEPINKKR PNESVSKTPV SGKKAKPAAA PASTPQKTEK KKGGHTATPH PAKKGGKSPV NANQSPKSGG QSSGGNNNKK PFNSGKQFGG SNNKGSNKGK
301: GKGRA
Arabidopsis Description
HDT2Histone deacetylase HDT2 [Source:UniProtKB/Swiss-Prot;Acc:Q56WH4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.