CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161
nucleus: 27291164
endoplasmic reticulum: 28499913
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH67840	Soybean	nucleus	75.09	76.39
PGSC0003DMT400021644	Potato	nucleus	48.81	49.83
Solyc09g009030.2.1	Tomato	nucleus	45.39	49.44
PGSC0003DMT400006927	Potato	nucleus	44.71	48.7
GSMUA_Achr8P07580_001	Banana	cytosol	18.43	47.79
HORVU3Hr1G092400.1	Barley	nucleus	10.24	46.88
VIT_08s0007g03940.t01	Wine grape	nucleus	47.44	46.64
Solyc10g085560.1.1	Tomato	nucleus	48.81	46.58
KRH26575	Soybean	nucleus	44.37	42.35
KRH22734	Soybean	nucleus	27.3	41.45
TraesCS1D01G454400.2	Wheat	nucleus	41.64	39.23
EES19871	Sorghum	nucleus	39.93	39.13
GSMUA_Achr3P22840_001	Banana	nucleus	41.64	38.73
Os05t0597100-01	Rice	nucleus	39.25	38.72
EES04076	Sorghum	nucleus	36.52	38.63
KRH30517	Soybean	nucleus	37.54	38.06
Zm00001d038832_P002	Maize	nucleus	38.91	38.0
Zm00001d012092_P001	Maize	nucleus	36.86	37.89
EES20078	Sorghum	nucleus	39.25	37.46
KRH25160	Soybean	nucleus	38.23	37.46
AT5G03740.1	Thale cress	nucleus	37.54	37.41
TraesCS1A01G445700.4	Wheat	nucleus	38.91	36.89
HORVU1Hr1G095140.2	Barley	nucleus	18.43	35.53
CDX70287	Canola	nucleus	23.21	34.69
Zm00001d012095_P001	Maize	cytosol, nucleus, plastid	18.09	34.64
Os01t0909150-00	Rice	cytosol	12.97	31.93
GSMUA_Achr10P...	Banana	plastid	40.27	31.55
CDY10359	Canola	nucleus	37.88	31.18
Bra009513.1-P	Field mustard	nucleus, plastid	37.54	30.56
Zm00001d042433_P001	Maize	nucleus	25.6	30.49
Zm00001d011139_P005	Maize	cytosol	30.38	28.62
KXG20698	Sorghum	nucleus	29.35	27.48
TraesCS3B01G450400.1	Wheat	nucleus	33.79	26.19
Zm00001d014548_P002	Maize	cytosol	17.06	26.04
KXG33961	Sorghum	nucleus	23.21	25.28
Os01t0909100-01	Rice	nucleus, peroxisome	18.77	22.54
TraesCS3D01G410300.2	Wheat	nucleus	27.65	22.25
Os01t0909500-02	Rice	cytosol	17.75	22.03
TraesCS3B01G450300.1	Wheat	nucleus	27.65	21.15
TraesCS3A01G415200.1	Wheat	nucleus	27.65	20.1
HORVU3Hr1G092390.4	Barley	nucleus, plastid	27.65	19.15
TraesCS3D01G410400.1	Wheat	nucleus	21.16	14.35

Protein Annotations

EMBL:ACUP02012146	EnsemblPlants:KRG96126	EnsemblPlantsGene:GLYMA_19G191000	EntrezGene:100784374	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR013087	InterPro:Znf_C2H2_type	PANTHER:PTHR31802	PANTHER:PTHR31802:SF8	PFscan:PS50157
ProteinID:KRG96126	ProteinID:KRG96126.1	ProteinID:KRG96127.1	ScanProsite:PS00028	SEG:seg	UniParc:UPI000233F5EA
UniProt:I1NAI9	MapMan:12.3.2.2	:	:	:	:

Description

hypothetical protein

Coordinates

chr19:-:44845487..44855885

Molecular Weight (calculated)

31914.9 Da

IEP (calculated)

4.372

GRAVY (calculated)

-1.100

Length

293 amino acids

Sequence
(BLAST)

001: MEFWGVEVKN GESLKVDPGD DKIIHLSNAC MGDVTKDIGG GPVALYVKFG NQKFVLGTLS SDKFPQISYD LVFEKEFELS HNWKYGSVFF TGFKAQPQSE
101: SDDDEDSDDI DEDIPVSAVN GKPEVGVKPD ANEAKQKKIA DPRKRDANGE DDDSSESDSD DDSSEDKPTA NGDIESSEGD DDSDDDEEEE GDDESDEETA
201: KKIEASNKRG IESSKKTPVP VKKTKFVTPQ KTDSKNVVHA ATPHPSKQAG KATANNKLQS PKSGGDYSCK PCNRLFKTED ALSSHNKAKH SAK

Best Arabidopsis Sequence Match ( AT5G03740.1 )
(BLAST)

001: MEFWGVEVKN GKPLHLDPGL DRLVHISQVA LGESKNNVTE PIQLYVTVGS DKLLIGTLSH EKFPQLSTEI VLERNFALSH TWKNGSVFFS GYKVDASDPE
101: PEDLIDDQLE AAGFKAAPKS AAKQVNFQLP NEDVKAKQDD DADGSEEDSS DDDDSENSGD EEEEKVTAES DSEEDDSSDD EEDDSSEEET PKKPEEPKKR
201: SAEPNSSKNP ASNKKAKFVT PQKTDSKKPH VHVATPHPSK QAGKNSGGGS TGETSKQQQT PKSAGAFGCK SCTRTFTSEM GLQSHTKAKH SAAA

Arabidopsis Description

HDT3HDT3 [Source:UniProtKB/TrEMBL;Acc:A0A178UP12]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.