Factsheet for TraesCS1A01G445700.4

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

mitochondrion 3
nucleus 3
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G454400.2	Wheat	nucleus	86.08	85.53
HORVU1Hr1G095140.2	Barley	nucleus	32.04	65.13
Os05t0597100-01	Rice	nucleus	57.28	59.6
EES19871	Sorghum	nucleus	53.72	55.52
Zm00001d038832_P002	Maize	nucleus	52.75	54.33
VIT_03s0132g00020.t01	Wine grape	nucleus	19.74	52.14
EES20078	Sorghum	nucleus	50.49	50.81
Solyc09g009030.2.1	Tomato	nucleus	40.13	46.1
PGSC0003DMT400006927	Potato	nucleus	39.48	45.35
PGSC0003DMT400021644	Potato	nucleus	40.45	43.55
KRH26575	Soybean	nucleus	41.1	41.37
Solyc10g085560.1.1	Tomato	nucleus	41.1	41.37
KRH67840	Soybean	nucleus	38.19	40.97
VIT_08s0007g03940.t01	Wine grape	nucleus	38.84	40.27
VIT_06s0061g01240.t01	Wine grape	nucleus	45.31	39.66
KRG96126	Soybean	nucleus	36.89	38.91
KRH22734	Soybean	nucleus	24.27	38.86
KRH25160	Soybean	nucleus	36.57	37.79
KRH30517	Soybean	nucleus	35.28	37.72
PGSC0003DMT400005672	Potato	nucleus	35.28	37.59
Solyc11g066840.1.1	Tomato	nucleus	36.57	35.65
VIT_06s0009g03080.t01	Wine grape	nucleus	12.62	34.82
Zm00001d011139_P005	Maize	cytosol	34.95	34.73
GSMUA_Achr8P01440_001	Banana	extracellular	25.89	33.61
Bra034373.1-P	Field mustard	nucleus	22.33	32.09
CDY30525	Canola	cytosol, nucleus, plastid	22.33	31.36
CDX77140	Canola	nucleus	21.68	31.16
AT2G27840.3	Thale cress	cytosol	20.39	31.03
PGSC0003DMT400068253	Potato	cytosol	33.33	28.93
TraesCS3A01G415200.1	Wheat	nucleus	27.51	21.09

Protein Annotations

EnsemblPlants:TraesCS1A01G445700.4	EnsemblPlantsGene:TraesCS1A01G445700	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	InterPro:IPR013087
InterPro:Znf_C2H2_type	PANTHER:PTHR31802	PANTHER:PTHR31802:SF8	PFscan:PS50157	ScanProsite:PS00028	SEG:seg
MapMan:12.3.2.2	:	:	:	:	:

Description

No Description!

Coordinates

chr1A:-:593397528..593400047

Molecular Weight (calculated)

33157.6 Da

IEP (calculated)

4.457

GRAVY (calculated)

-1.052

Length

309 amino acids

Sequence
(BLAST)

001: MEFWALRLSL TSPSRFHLMM TTSSISPGAL GEVKKDDKAT MFVKIGDQKL AIGTLSTDKF PQIQFDLVFE KEFELSHNSK TSSVFFSGYK VFQPADGDEM
101: DFDSEEESEE EQDTIIPALT KENGKPEAKE QKKQVKIDTA APSKSKPAAK DGGKSNKDDD SDDDDDSDED DSQDDSGDDG ALIPMEDDSD DSEGGDDSSD
201: DSEDSSDEEE EETPKKQETG KKRAAGSVLK TPVTDKKAKI ATPSGQKTGD KKGAVHVATP HPAKKAGKTP ATSDKSPKSG GSVACKSCSK TFNSEGALAS
301: HSKAKHEAK

Best Arabidopsis Sequence Match ( AT5G22650.1 )
(BLAST)

001: MEFWGVAVTP KNATKVTPEE DSLVHISQAS LDCTVKSGES VVLSVTVGGA KLVIGTLSQD KFPQISFDLV FDKEFELSHS GTKANVHFIG YKSPNIEQDD
101: FTSSDDEDVP EAVPAPAPTA VTANGNAGAA VVKADTKPKA KPAEVKPAEE KPESDEEDES DDEDESEEDD DSEKGMDVDE DDSDDDEEED SEDEEEEETP
201: KKPEPINKKR PNESVSKTPV SGKKAKPAAA PASTPQKTEE KKKGGHTATP HPAKKGGKSP VNANQSPKSG GQSSGGNNNK KPFNSGKQFG GSNNKGSNKG
301: KGKGRA

Arabidopsis Description

HDT2Histone deacetylase HDT2 [Source:UniProtKB/Swiss-Prot;Acc:Q56WH4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.