Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX70287 | Canola | nucleus | 34.01 | 51.02 |
| VIT_08s0007g03940.t01 | Wine grape | nucleus | 45.24 | 44.63 |
| CDY10359 | Canola | nucleus | 52.38 | 43.26 |
| AT3G44750.1 | Thale cress | nucleus | 35.71 | 42.86 |
| KRH67840 | Soybean | nucleus | 41.84 | 42.71 |
| Bra009513.1-P | Field mustard | nucleus, plastid | 51.7 | 42.22 |
| PGSC0003DMT400021644 | Potato | nucleus | 40.82 | 41.81 |
| PGSC0003DMT400006927 | Potato | nucleus | 37.76 | 41.26 |
| Solyc09g009030.2.1 | Tomato | nucleus | 37.76 | 41.26 |
| Solyc10g085560.1.1 | Tomato | nucleus | 42.18 | 40.39 |
| KRG96126 | Soybean | nucleus | 37.41 | 37.54 |
| GSMUA_Achr3P22840_001 | Banana | nucleus | 36.05 | 33.65 |
| GSMUA_Achr8P07580_001 | Banana | cytosol | 12.59 | 32.74 |
| AT5G22650.1 | Thale cress | nucleus | 32.31 | 31.05 |
| AT2G27840.3 | Thale cress | cytosol | 20.07 | 29.06 |
| GSMUA_Achr10P... | Banana | plastid | 35.71 | 28.07 |
Protein Annotations
| MapMan:12.3.2.2 | EntrezGene:831733 | UniProt:A0A178UP12 | ProteinID:AED90649.1 | EMBL:AF255712 | EMBL:AF372889 |
| EMBL:AF510168 | ArrayExpress:AT5G03740 | EnsemblPlantsGene:AT5G03740 | RefSeq:AT5G03740 | TAIR:AT5G03740 | RefSeq:AT5G03740-TAIR-G |
| EnsemblPlants:AT5G03740.1 | TAIR:AT5G03740.1 | EMBL:AY142039 | ProteinID:BAB08599.1 | ProteinID:CAB82939.1 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005730 | GO:GO:0006139 | GO:GO:0006325 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0006950 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009414 | GO:GO:0009628 | GO:GO:0009651 | GO:GO:0009719 | GO:GO:0009737 | GO:GO:0009987 |
| GO:GO:0016043 | GO:GO:0016569 | GO:GO:0016787 | GO:GO:0043565 | GO:GO:0045892 | GO:GO:0046872 |
| Symbol:HD2C | InterPro:IPR013087 | RefSeq:NP_195994.3 | ProteinID:OAO95147.1 | PO:PO:0000003 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | ScanProsite:PS00028 | PFscan:PS50157 | PANTHER:PTHR31802 |
| PANTHER:PTHR31802:SF8 | UniProt:Q9LZR5 | UniParc:UPI00000A8CA4 | InterPro:Znf_C2H2_type | SEG:seg | : |
Description
HDT3HDT3 [Source:UniProtKB/TrEMBL;Acc:A0A178UP12]
Coordinates
chr5:+:981859..984289
Molecular Weight (calculated)
31831.9 Da
IEP (calculated)
4.511
GRAVY (calculated)
-1.055
Length
294 amino acids
Sequence
(BLAST)
(BLAST)
001: MEFWGVEVKN GKPLHLDPGL DRLVHISQVA LGESKNNVTE PIQLYVTVGS DKLLIGTLSH EKFPQLSTEI VLERNFALSH TWKNGSVFFS GYKVDASDPE
101: PEDLIDDQLE AAGFKAAPKS AAKQVNFQLP NEDVKAKQDD DADGSEEDSS DDDDSENSGD EEEEKVTAES DSEEDDSSDD EEDDSSEEET PKKPEEPKKR
201: SAEPNSSKNP ASNKKAKFVT PQKTDSKKPH VHVATPHPSK QAGKNSGGGS TGETSKQQQT PKSAGAFGCK SCTRTFTSEM GLQSHTKAKH SAAA
101: PEDLIDDQLE AAGFKAAPKS AAKQVNFQLP NEDVKAKQDD DADGSEEDSS DDDDSENSGD EEEEKVTAES DSEEDDSSDD EEDDSSEEET PKKPEEPKKR
201: SAEPNSSKNP ASNKKAKFVT PQKTDSKKPH VHVATPHPSK QAGKNSGGGS TGETSKQQQT PKSAGAFGCK SCTRTFTSEM GLQSHTKAKH SAAA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.