Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX92341 | Canola | nucleus | 98.08 | 98.08 |
| Bra020209.1-P | Field mustard | nucleus | 56.32 | 49.0 |
| Bra006629.1-P | Field mustard | nucleus | 48.28 | 46.15 |
| AT5G22650.1 | Thale cress | nucleus | 52.87 | 45.1 |
| Bra020206.1-P | Field mustard | cytosol | 28.35 | 40.22 |
| Bra020204.1-P | Field mustard | cytosol | 25.29 | 37.93 |
| VIT_03s0132g00020.t01 | Wine grape | nucleus | 16.48 | 36.75 |
| GSMUA_Achr8P07580_001 | Banana | cytosol | 15.33 | 35.4 |
| PGSC0003DMT400005672 | Potato | nucleus | 38.7 | 34.83 |
| VIT_06s0009g03080.t01 | Wine grape | nucleus | 14.56 | 33.93 |
| Solyc11g066840.1.1 | Tomato | nucleus | 41.0 | 33.75 |
| GSMUA_Achr3P22840_001 | Banana | nucleus | 37.16 | 30.79 |
| VIT_06s0061g01240.t01 | Wine grape | nucleus | 40.23 | 29.75 |
| Bra034373.1-P | Field mustard | nucleus | 24.14 | 29.3 |
| PGSC0003DMT400068253 | Potato | cytosol | 38.7 | 28.37 |
| GSMUA_Achr10P... | Banana | plastid | 36.78 | 25.67 |
| Bra009513.1-P | Field mustard | nucleus, plastid | 32.57 | 23.61 |
Protein Annotations
| EnsemblPlants:Bra002425.1 | EnsemblPlants:Bra002425.1-P | EnsemblPlantsGene:Bra002425 | Gene3D:2.60.120.340 | PANTHER:PTHR31802 | PANTHER:PTHR31802:SF8 |
| SEG:seg | UniParc:UPI000254449B | UniProt:M4CDZ4 | MapMan:12.3.2.2 | : | : |
Description
AT5G22650 (E=4e-027) HD2B, HDT02, HDT2, ATHD2B, HDA4, HD2 | HD2B (HISTONE DEACETYLASE 2B); histone deacetylase
Coordinates
chrA10:-:9653453..9655071
Molecular Weight (calculated)
28086.9 Da
IEP (calculated)
4.391
GRAVY (calculated)
-1.002
Length
261 amino acids
Sequence
(BLAST)
(BLAST)
001: MKFWGAEVKA GMPLKVRPQV DHLIHLSQAT IDGAKKGESG LLYVNIDWKK YVIGTLSQDH IPQITFDLVF EQEFELSHSL SQGSVHFAGF KSPNIDQEDY
101: PSDSEEDEVV AVPATSTVTS DGNAAAAASN VVKASEVKPE SDEDDDDESD EEEDDSEDDG ADPEKLMEVD EDDSEDEEEE ETPKQPEPIN KKRAAASASK
201: TPVPAKKKTK TAVAATPQKT QNTEEKKKGG HAATPHPAKK GGKNANQSPK SGGQSSGGNK K
101: PSDSEEDEVV AVPATSTVTS DGNAAAAASN VVKASEVKPE SDEDDDDESD EEEDDSEDDG ADPEKLMEVD EDDSEDEEEE ETPKQPEPIN KKRAAASASK
201: TPVPAKKKTK TAVAATPQKT QNTEEKKKGG HAATPHPAKK GGKNANQSPK SGGQSSGGNK K
001: MEFWGVAVTP KNATKVTPEE DSLVHISQAS LDCTVKSGES VVLSVTVGGA KLVIGTLSQD KFPQISFDLV FDKEFELSHS GTKANVHFIG YKSPNIEQDD
101: FTSSDDEDVP EAVPAPAPTA VTANGNAGAA VVKADTKPKA KPAEVKPAEE KPESDEEDES DDEDESEEDD DSEKGMDVDE DDSDDDEEED SEDEEEEETP
201: KKPEPINKKR PNESVSKTPV SGKKAKPAAA PASTPQKTEE KKKGGHTATP HPAKKGGKSP VNANQSPKSG GQSSGGNNNK KPFNSGKQFG GSNNKGSNKG
301: KGKGRA
101: FTSSDDEDVP EAVPAPAPTA VTANGNAGAA VVKADTKPKA KPAEVKPAEE KPESDEEDES DDEDESEEDD DSEKGMDVDE DDSDDDEEED SEDEEEEETP
201: KKPEPINKKR PNESVSKTPV SGKKAKPAAA PASTPQKTEE KKKGGHTATP HPAKKGGKSP VNANQSPKSG GQSSGGNNNK KPFNSGKQFG GSNNKGSNKG
301: KGKGRA
Arabidopsis Description
HDT2Histone deacetylase HDT2 [Source:UniProtKB/Swiss-Prot;Acc:Q56WH4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.