Factsheet for VIT_06s0004g06630.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 2
extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 7
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	plasma membrane
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P06580_001	Banana	cytosol	42.89	63.58
PGSC0003DMT400078044	Potato	endoplasmic reticulum, golgi, mitochondrion	61.85	61.99
KRG98287	Soybean	endoplasmic reticulum, golgi, vacuole	61.64	61.64
Solyc06g076980.2.1	Tomato	unclear	61.21	61.34
KRH30306	Soybean	plastid	61.85	57.86
Bra015563.1-P	Field mustard	mitochondrion	59.91	55.16
CDY06688	Canola	mitochondrion	59.91	55.16
CDY10259	Canola	mitochondrion	59.7	55.07
CDY09932	Canola	endoplasmic reticulum, golgi	59.7	54.96
Bra031558.1-P	Field mustard	endoplasmic reticulum, golgi, mitochondrion	59.27	54.46
CDY59071	Canola	endoplasmic reticulum, golgi, vacuole	59.27	54.13
AT1G07220.1	Thale cress	mitochondrion	58.84	53.85
Os05t0149500-01	Rice	extracellular	33.41	52.36
TraesCS1B01G117800.1	Wheat	mitochondrion	51.94	49.69
TraesCS1A01G089800.1	Wheat	endoplasmic reticulum, golgi, plastid	51.72	49.38
Zm00001d024854_P001	Maize	mitochondrion	50.86	49.17
TraesCS1D01G098300.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	50.43	48.15
EES17717	Sorghum	mitochondrion	50.86	47.48
HORVU1Hr1G020420.2	Barley	mitochondrion, plastid	51.51	46.59
VIT_15s0046g03140.t01	Wine grape	cytosol	22.63	45.06
VIT_02s0025g03710.t01	Wine grape	cytosol	24.35	41.54
VIT_15s0046g03100.t01	Wine grape	mitochondrion	11.21	40.62
VIT_16s0050g00190.t01	Wine grape	nucleus	24.35	40.36
VIT_15s0046g03110.t01	Wine grape	cytosol	32.33	39.89
VIT_15s0046g03080.t01	Wine grape	cytosol	35.78	39.24
VIT_15s0046g03120.t01	Wine grape	cytosol	36.21	38.98
VIT_15s0046g03050.t01	Wine grape	cytosol	35.34	38.77
VIT_16s0050g00160.t01	Wine grape	endoplasmic reticulum, golgi, vacuole	40.3	37.47
VIT_02s0025g03720.t01	Wine grape	endoplasmic reticulum, extracellular, plasma membrane	17.03	35.75
VIT_15s0046g03150.t01	Wine grape	golgi	39.87	35.65
VIT_15s0046g03130.t01	Wine grape	cytosol	16.59	34.68
VIT_15s0046g03060.t01	Wine grape	cytosol	8.41	32.77
VIT_15s0046g03070.t01	Wine grape	golgi	37.07	32.76
VIT_15s0046g03090.t01	Wine grape	cytoskeleton, golgi, nucleus	36.21	31.28

Protein Annotations

EntrezGene:100853312	wikigene:100853312	MapMan:35.2	EMBL:AM479738	ProteinID:CAN70836	ProteinID:CAN70836.1
ProteinID:CBI15952	ProteinID:CBI15952.3	UniProt:D7SJX6	EMBL:FN594951	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0005623	GO:GO:0006629	GO:GO:0006664	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0012505	GO:GO:0016020	GO:GO:0016021	GO:GO:0016740	GO:GO:0046527
EntrezGene:LOC100853312	wikigene:LOC100853312	InterPro:LipoPS_modifying	PFAM:PF05686	PANTHER:PTHR12203	PANTHER:PTHR12203:SF28
SMART:SM00672	TMHMM:TMhelix	UniParc:UPI0001BE11DE	ArrayExpress:VIT_06s0004g06630	EnsemblPlantsGene:VIT_06s0004g06630	EnsemblPlants:VIT_06s0004g06630.t01
RefSeq:XP_003632132	RefSeq:XP_003632132.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr6:+:7348472..7352026

Molecular Weight (calculated)

53554.4 Da

IEP (calculated)

7.773

GRAVY (calculated)

-0.215

Length

464 amino acids

Sequence
(BLAST)

001: MPMRAAPSLP FLRPCIIFSP FFFLIILVIY QVDDFASQTK TVVGHNLNPT PWHLFPPNTF TEKTRYARVS KIIQCSYLTC RRRSITPTTT KIPEWHTRQS
101: SNTVGKCPMF FTRIDHDLQP WVRSGISLSS VMEAQKFAAF RVVIVGGKLY VDFFYACVQS RAMFTVWGLL QLLRRYPGTV PDVDLMFDCM DKPTISREEH
201: GSKPLPLFRY CTTMDHFDIP FPDWSFWGWP EIDIGPWDEE FIGIKQGSQV LNWTQKLSYA YWKGNPDVQS PVRVDLLQCN NSDIIGAQIM RQDWVEEAKN
301: GFKESKLSNQ CNHRYKIYAE GYAWSVSLKY ILSCGSLALI IAPQYEEFFN HGLISMTNYW PISRLDICPS IKFAVSWGNT HHSEAKAIGK SGQDLMESMS
401: MARVYDYMYH LITEYSKLLR FKPEPPPSAH EICEESLLCF ADPTQRQCLE RSTTYPSPTP PCTL

Best Arabidopsis Sequence Match ( AT1G07220.1 )
(BLAST)

001: MGLRLRLRLP HKSSPRSPSY LLLCVLALSF FSFTALLFYK VDDFIAQTKT LAGHNLEPTP WHIFPRKSFS AATKHSQAYR ILQCSYFSCP YKAVVQPKSL
101: HSESGSGRQT HQPQCPDFFR WIHRDLEPWA KTGVTKEHVK RAKANAAFRV VILSGKLYVD LYYACVQSRM MFTIWGILQL LTKYPGMVPD VDMMFDCMDK
201: PIINQTEYQS FPVPLFRYCT NEAHLDIPFP DWSFWGWSET NLRPWEEEFG DIKQGSRRRS WYNKQPRAYW KGNPDVVSPI RLELMKCNHS RLWGAQIMRQ
301: DWAEEAKGGF EQSKLSNQCN HRYKIYAEGY AWSVSLKYIL SCGSMTLIIS PEYEDFFSRG LLPKENYWPI SPTDLCRSIK YAVDWGNSNP SEAETIGKRG
401: QGYMESLSMN RVYDYMFHLI TEYSKLQKFK PEKPASANEV CAGSLLCIAE QKERELLERS RVVPSLDQPC KFPVEDRNRL EWLIQQKNKT IENVRYMEMT
501: RTQRGSK

Arabidopsis Description

F10K1.7 protein [Source:UniProtKB/TrEMBL;Acc:Q9LML4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.