Factsheet for Solyc06g076980.2.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear

Predictor Summary:

nucleus 2
mitochondrion 2
endoplasmic reticulum 3
extracellular 2
vacuole 2
plasma membrane 2
golgi 3
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	unclear
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	golgi

unclear: 26455813

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400078044	Potato	endoplasmic reticulum, golgi, mitochondrion	95.46	95.46
KRG98287	Soybean	endoplasmic reticulum, golgi, vacuole	65.01	64.87
GSMUA_Achr7P06580_001	Banana	cytosol	43.2	63.9
VIT_06s0004g06630.t01	Wine grape	plasma membrane	61.34	61.21
KRH30306	Soybean	plastid	64.36	60.08
AT1G07220.1	Thale cress	mitochondrion	63.28	57.79
Bra015563.1-P	Field mustard	mitochondrion	62.85	57.74
CDY06688	Canola	mitochondrion	62.85	57.74
CDY10259	Canola	mitochondrion	62.42	57.46
Bra031558.1-P	Field mustard	endoplasmic reticulum, golgi, mitochondrion	61.99	56.83
CDY09932	Canola	endoplasmic reticulum, golgi	61.77	56.75
CDY59071	Canola	endoplasmic reticulum, golgi, vacuole	61.99	56.5
Os05t0149500-01	Rice	extracellular	35.21	55.07
TraesCS1B01G117800.1	Wheat	mitochondrion	53.78	51.34
TraesCS1A01G089800.1	Wheat	endoplasmic reticulum, golgi, plastid	53.56	51.03
Zm00001d024854_P001	Maize	mitochondrion	52.48	50.62
TraesCS1D01G098300.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	52.92	50.41
EES17717	Sorghum	mitochondrion	53.35	49.7
HORVU1Hr1G020420.2	Barley	mitochondrion, plastid	54.0	48.73
Solyc03g025770.2.1	Tomato	endoplasmic reticulum, golgi, vacuole	41.47	38.55
Solyc03g025760.2.1	Tomato	endoplasmic reticulum, golgi	42.76	38.52
Solyc01g094390.2.1	Tomato	endoplasmic reticulum, golgi, vacuole	38.23	37.5
Solyc03g025780.2.1	Tomato	golgi	40.82	37.28
Solyc05g048800.1.1	Tomato	cytosol	18.79	35.8
Solyc01g094380.2.1	Tomato	cytosol, extracellular, golgi, plastid	38.88	35.09

Protein Annotations

MapMan:35.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005623	GO:GO:0006629
GO:GO:0006664	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0012505	GO:GO:0016020
GO:GO:0016021	GO:GO:0016740	GO:GO:0046527	UniProt:K4CA56	InterPro:LipoPS_modifying	PFAM:PF05686
PANTHER:PTHR12203	PANTHER:PTHR12203:SF28	SMART:SM00672	EnsemblPlantsGene:Solyc06g076980.2	EnsemblPlants:Solyc06g076980.2.1	TMHMM:TMhelix
UniParc:UPI000276558F	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr6:+:47838441..47840886

Molecular Weight (calculated)

53559.4 Da

IEP (calculated)

8.448

GRAVY (calculated)

-0.232

Length

463 amino acids

Sequence
(BLAST)

001: MGIFSRHNRR PSFLPRYVVF FAFLFLALIL FFEVDNLVSQ TKTIVGHNLE PTPWHIFPAK SFDDESTYSK ASTIIQCSYL TCSSSSHVVD IPRSTKPQSK
101: SHKCPDFFKS IRYDLEPWAK SRISINHVME AQKNAAFRVV IVGGKLFVDF YYACVQSRAM FTIWGILQLL RKYPGKVPDV DLMFDCMDKP IINRTEHSSM
201: PVPLFRYCTT PNHYDIPFPD WSFWGWSEIN IRPWNEEFKS IKEGSNSKSW TSKIPVAYWK GNPDVVSPIR LELLNCNDTK MWRAQIMRQN WTEEAKVGFE
301: KSKLSKQCNH RYKIYAEGYA WSVSLKYILS CGSLPLIITP QYQDFFSRGL IPKKNYWPLP PFDLCPSIKQ AVDWGNANPL EAEAIGKAGQ DFMESLSIDR
401: IYDYMYHLIS EYAKLQDFVP VPPSSALELC IDTVLCFADD QQKRFLKKSL VFPSNESPCS LPI

Best Arabidopsis Sequence Match ( AT1G07220.1 )
(BLAST)

001: MGLRLRLRLP HKSSPRSPSY LLLCVLALSF FSFTALLFYK VDDFIAQTKT LAGHNLEPTP WHIFPRKSFS AATKHSQAYR ILQCSYFSCP YKAVVQPKSL
101: HSESGSGRQT HQPQCPDFFR WIHRDLEPWA KTGVTKEHVK RAKANAAFRV VILSGKLYVD LYYACVQSRM MFTIWGILQL LTKYPGMVPD VDMMFDCMDK
201: PIINQTEYQS FPVPLFRYCT NEAHLDIPFP DWSFWGWSET NLRPWEEEFG DIKQGSRRRS WYNKQPRAYW KGNPDVVSPI RLELMKCNHS RLWGAQIMRQ
301: DWAEEAKGGF EQSKLSNQCN HRYKIYAEGY AWSVSLKYIL SCGSMTLIIS PEYEDFFSRG LLPKENYWPI SPTDLCRSIK YAVDWGNSNP SEAETIGKRG
401: QGYMESLSMN RVYDYMFHLI TEYSKLQKFK PEKPASANEV CAGSLLCIAE QKERELLERS RVVPSLDQPC KFPVEDRNRL EWLIQQKNKT IENVRYMEMT
501: RTQRGSK

Arabidopsis Description

F10K1.7 protein [Source:UniProtKB/TrEMBL;Acc:Q9LML4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.