CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 4
endoplasmic reticulum 2
extracellular 1
vacuole 1
plasma membrane 1
golgi 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY06688	Canola	mitochondrion	96.82	96.63
CDY09932	Canola	endoplasmic reticulum, golgi	87.48	87.3
CDY59071	Canola	endoplasmic reticulum, golgi, vacuole	87.28	86.42
AT1G07220.1	Thale cress	mitochondrion	85.69	85.01
GSMUA_Achr7P06580_001	Banana	cytosol	40.76	65.5
KRG98287	Soybean	endoplasmic reticulum, golgi, vacuole	58.25	63.15
Solyc06g076980.2.1	Tomato	unclear	57.46	62.42
PGSC0003DMT400078044	Potato	endoplasmic reticulum, golgi, mitochondrion	57.26	62.2
VIT_06s0004g06630.t01	Wine grape	plasma membrane	55.07	59.7
KRH30306	Soybean	plastid	57.65	58.47
Os05t0149500-01	Rice	extracellular	31.61	53.72
TraesCS1B01G117800.1	Wheat	mitochondrion	49.7	51.55
Zm00001d024854_P001	Maize	mitochondrion	48.91	51.25
TraesCS1A01G089800.1	Wheat	endoplasmic reticulum, golgi, plastid	49.5	51.23
TraesCS1D01G098300.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	49.5	51.23
EES17717	Sorghum	mitochondrion	49.3	49.9
HORVU1Hr1G020420.2	Barley	mitochondrion, plastid	50.1	49.12
CDY69828	Canola	mitochondrion	34.0	44.53
CDX71752	Canola	cytosol	35.39	41.4
CDY48932	Canola	endoplasmic reticulum	39.36	40.33
CDX71753	Canola	endoplasmic reticulum	38.97	39.92
CDY58789	Canola	endoplasmic reticulum, golgi	38.97	39.36
CDX89107	Canola	mitochondrion	35.79	39.3
CDY45704	Canola	endoplasmic reticulum, golgi	38.57	38.96
CDX88050	Canola	plastid	39.96	37.64
CDX80388	Canola	plastid	39.76	37.38
CDY27355	Canola	golgi, mitochondrion, nucleus, plasma membrane, plastid	38.77	36.93
CDX71750	Canola	plasma membrane	38.17	36.92
CDY37069	Canola	golgi	38.37	36.9
CDY18897	Canola	golgi, mitochondrion, plastid, vacuole	37.38	36.79
CDY08097	Canola	plastid	39.96	36.75
CDY05887	Canola	golgi	39.96	36.75
CDX71749	Canola	cytosol, golgi, plasma membrane	31.61	36.64
CDY48930	Canola	plasma membrane	38.17	36.23
CDY25494	Canola	mitochondrion	39.36	34.2
CDY48931	Canola	plasma membrane	22.27	34.15
CDY18896	Canola	golgi, plasma membrane, plastid	25.45	32.49
CDX74769	Canola	mitochondrion, peroxisome, plasma membrane, plastid	36.18	28.53
CDY42493	Canola	cytosol	35.79	20.81

Protein Annotations

EnsemblPlants:CDY10259	EnsemblPlantsGene:GSBRNA2T00032085001	GO:A0A078FB56	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:LipoPS_modifying	ncoils:Coil	PANTHER:PTHR12203	PANTHER:PTHR12203:SF28	PFAM:PF05686	ProteinID:CDY10259
ProteinID:CDY10259.1	SMART:SM00672	TMHMM:TMhelix	UniParc:UPI0004EE9193	UniProt:A0A078FB56	MapMan:35.2

Description

BnaC05g05020DBnaC05g05020D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FB56]

Coordinates

chrLK032001:-:806465..808812

Molecular Weight (calculated)

58640.4 Da

IEP (calculated)

9.000

GRAVY (calculated)

-0.571

Length

503 amino acids

Sequence
(BLAST)

001: MGLRLRIRLP HKSSPRTPSH LLLCVLALCF FSFTALILYK VDDFVAQTKT LAGHNLEPTP WHIFPRKSFT EATTYRILQC SYFSCPHHSA PDPKTHPSDS
101: GSGHRTGQQQ CPDVFRWIHR DLEPWLKTGV TKEHVEKAKA NAAFRVVILS GKLYVDLYYA CVQSRMMFTV WGILQLLSKY PGMVPDVDMM FDCMDKPIIN
201: RTEHQSFPAP LFRYCTNEDH LDIPFPDWSF WGWSETNLRP WEEEFRDIKK GSKRSSWDSK QPRAYWKGNP DVVSPIRMEL MKCNHSRLWG AQIMRQNWAE
301: EAKGGFEQSK LSNQCNHRYK IYAEGYAWSV SLKYIMSCGS MTLIISPEYE DFFSRGLLPK ENYWPVSPTD LCRSIKFAVD WGNANPSDAE RIGKRGQGYM
401: ESISMNRVYD YMFHLINEYS KLQRFKPVKP PSAKEVCAGS LMCFAEQKER ELLERSRAVP SMDRPCKLPD ADRDRLERLI QRKKQTIEDV RNMEMTKTER
501: GSR

Best Arabidopsis Sequence Match ( AT1G07220.1 )
(BLAST)

001: MGLRLRLRLP HKSSPRSPSY LLLCVLALSF FSFTALLFYK VDDFIAQTKT LAGHNLEPTP WHIFPRKSFS AATKHSQAYR ILQCSYFSCP YKAVVQPKSL
101: HSESGSGRQT HQPQCPDFFR WIHRDLEPWA KTGVTKEHVK RAKANAAFRV VILSGKLYVD LYYACVQSRM MFTIWGILQL LTKYPGMVPD VDMMFDCMDK
201: PIINQTEYQS FPVPLFRYCT NEAHLDIPFP DWSFWGWSET NLRPWEEEFG DIKQGSRRRS WYNKQPRAYW KGNPDVVSPI RLELMKCNHS RLWGAQIMRQ
301: DWAEEAKGGF EQSKLSNQCN HRYKIYAEGY AWSVSLKYIL SCGSMTLIIS PEYEDFFSRG LLPKENYWPI SPTDLCRSIK YAVDWGNSNP SEAETIGKRG
401: QGYMESLSMN RVYDYMFHLI TEYSKLQKFK PEKPASANEV CAGSLLCIAE QKERELLERS RVVPSLDQPC KFPVEDRNRL EWLIQQKNKT IENVRYMEMT
501: RTQRGSK

Arabidopsis Description

F10K1.7 protein [Source:UniProtKB/TrEMBL;Acc:Q9LML4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.