CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, golgi, plastid

Predictor Summary:

plastid 4
plasma membrane 3
extracellular 2
endoplasmic reticulum 2
vacuole 2
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, plasma membrane, plastid
Any Predictor:	plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plasma membrane
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT2G45840.1	Thale cress	plasma membrane	73.1	55.07
CDY48931	Canola	plasma membrane	42.64	51.22
CDX71749	Canola	cytosol, golgi, plasma membrane	53.05	48.16
CDX71752	Canola	cytosol	50.0	45.81
CDX89107	Canola	mitochondrion	48.48	41.7
CDY48930	Canola	plasma membrane	55.08	40.94
CDX71750	Canola	plasma membrane	53.81	40.77
VIT_15s0046g03100.t01	Wine grape	mitochondrion	12.94	39.84
KRH40487	Soybean	cytosol	35.03	39.77
CDY18897	Canola	golgi, mitochondrion, plastid, vacuole	46.95	36.2
GSMUA_Achr5P12260_001	Banana	mitochondrion	34.77	36.05
Os04t0534100-01	Rice	mitochondrion	39.34	35.39
CDY37069	Canola	golgi	45.94	34.61
CDY27355	Canola	golgi, mitochondrion, nucleus, plasma membrane, plastid	46.19	34.47
KRH00707	Soybean	cytosol	31.73	34.15
VIT_15s0046g03140.t01	Wine grape	cytosol	20.05	33.91
KRH65090	Soybean	extracellular	40.86	33.82
CDX71753	Canola	endoplasmic reticulum	41.88	33.6
CDY48932	Canola	endoplasmic reticulum	41.88	33.6
CDY69828	Canola	mitochondrion	32.49	33.33
Os02t0642700-01	Rice	plastid	39.85	33.12
HORVU6Hr1G060750.4	Barley	cytosol, peroxisome	41.37	32.8
KRH48168	Soybean	plasma membrane	41.37	32.8
CDY58789	Canola	endoplasmic reticulum, golgi	41.12	32.53
CDX88050	Canola	plastid	43.91	32.4
CDY45704	Canola	endoplasmic reticulum, golgi	40.86	32.33
KRH65092	Soybean	endoplasmic reticulum, plasma membrane, vacuole	40.61	32.0
CDX80388	Canola	plastid	42.89	31.59
EES07545	Sorghum	plastid	43.4	30.98
CDY08097	Canola	plastid	42.64	30.71
TraesCS2B01G093400.1	Wheat	golgi, mitochondrion, plastid	39.09	30.68
CDY05887	Canola	golgi	42.39	30.53
Zm00001d051287_P001	Maize	plastid	42.13	30.13
TraesCS2A01G368900.2	Wheat	plastid	41.37	29.37
CDY25494	Canola	mitochondrion	43.15	29.36
Zm00001d002836_P006	Maize	plastid	40.1	29.21
EES11181	Sorghum	plastid	40.86	29.01
TraesCS2D01G365600.1	Wheat	plastid	40.86	29.01
TraesCS6A01G237500.1	Wheat	cytosol, mitochondrion	34.52	29.0
TraesCS2B01G386200.1	Wheat	plastid	40.61	28.93
TraesCS6D01G220200.2	Wheat	cytosol, mitochondrion	34.52	28.39
TraesCSU01G025200.1	Wheat	plastid	40.1	28.06
CDX74769	Canola	mitochondrion, peroxisome, plasma membrane, plastid	45.43	28.06
TraesCS6B01G266000.1	Wheat	plastid	42.13	27.17
CDY59071	Canola	endoplasmic reticulum, golgi, vacuole	33.76	26.18
CDY09932	Canola	endoplasmic reticulum, golgi	32.99	25.79
CDY06688	Canola	mitochondrion	32.74	25.6
CDY10259	Canola	mitochondrion	32.49	25.45
CDY42493	Canola	cytosol	48.22	21.97
VIT_15s0046g03130.t01	Wine grape	cytosol	11.68	20.72

Protein Annotations

EnsemblPlants:CDY18896	EnsemblPlantsGene:GSBRNA2T00006086001	GO:A0A078G0S5	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:LipoPS_modifying	PANTHER:PTHR12203	PANTHER:PTHR12203:SF28	PFAM:PF05686	ProteinID:CDY18896	ProteinID:CDY18896.1
SEG:seg	SMART:SM00672	TMHMM:TMhelix	UniParc:UPI0004EF3116	UniProt:A0A078G0S5	MapMan:35.2

Description

BnaC04g04540DBnaC04g04540D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G0S5]

Coordinates

chrLK032090:-:176325..178147

Molecular Weight (calculated)

46501.6 Da

IEP (calculated)

10.133

GRAVY (calculated)

-0.306

Length

394 amino acids

Sequence
(BLAST)

001: MNPQHKNFIS SLSSKVTKSC ITTTIFSIVF FIILHGVSVG WMDLLLLAGG RIKLTPIFTR NTFFTIPKKT LTIPFNFTLQ CTLDKNITTQ TCPASYPEKW
101: NPKDDPETCP DYFRWIHKDL EPWRETGITR ETLERARDKA HFRLIIKGGR VYVHRNMRSF QTRDVFITIW GILQLLRMYP GQVPDLELLF QCHDLLQIWR
201: RDYRPRRGVN VTWPPPPVFH YCGHDGAFNI VFPDWSFWGW PEINIKEWNK LSKAISEGIK KVKWKERKPY AYWKGNPGVA RIRRDLMRYH DPMIHLIHQV
301: YIYNGIGFRT SNLADQCTHR YKIYIEGRAW SVSEKYILAC DSMSLLIKPF YFDFITRSLV PMEHYWPILD FIKNAMTSSL PSNGATTIPK RQKL

Best Arabidopsis Sequence Match ( AT2G45840.1 )
(BLAST)

001: MSSHVVDDQR QPNNSISSLS SKLTKPWITT TIFIFVFFFF IILVGASLRW MDMFLIGGGR IKVTPIFTRN TNATIPKEKL TTPLNFTLQC SLDQNIATQT
101: CPASNPEKSQ PSKDEPETCP DYFRWIHKDL EAWRETGITR ETLERASDKA HFRLIIKGGR VYVHQYKKSF QTRDVFTIWG IVQLLRMYPG QVPDLELLFM
201: CHDSPEIWRR DYRPRPGVNV TWPPPPLFHY CGHSGAFDIV FPDWSFWGWP EINIKEWNKQ SELISEGIKK VKWEEREPYA YWKGNPGVAM VRRDLMHCHD
301: PMVHLYRQDW SREGRIGYRT SNLEDQCTHR YKIYVEGRAW SVSEKYILAC DSMTLLVKPF YFDFFTRSLV PMEHYWPIRP QEKCSDIVFA VHWGNNNTKK
401: ARAIGRNGSG YVRKNLKMKY VYDYMLHLLQ SYGKLMKMNV EVPQGAKEVC PETMACPING GRMRQSMDDS LVMSPSVKAT CEMPPPFEED ELKKFLEKKE
501: SVEKEVEKWT NEYWQEQKKI LKH

Arabidopsis Description

Glycosyltransferase [Source:UniProtKB/TrEMBL;Acc:F4IH52]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.