CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
endoplasmic reticulum 1
nucleus 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX88050	Canola	plastid	98.32	98.5
Bra009709.1-P	Field mustard	plastid	97.57	97.75
AT5G23850.1	Thale cress	endoplasmic reticulum, mitochondrion, peroxisome, plastid	86.92	85.79
CDY05887	Canola	golgi	74.77	73.13
CDY08097	Canola	plastid	74.21	72.58
VIT_16s0050g00190.t01	Wine grape	nucleus	35.33	67.5
GSMUA_Achr5P12260_001	Banana	mitochondrion	46.17	65.0
KRH08971	Soybean	cytosol	28.41	63.6
VIT_16s0050g00160.t01	Wine grape	endoplasmic reticulum, golgi, vacuole	58.13	62.32
KRH09038	Soybean	cytosol	30.65	60.74
KRH09011	Soybean	cytosol	60.0	60.11
KRH08981	Soybean	plastid	42.43	59.74
KRH09010	Soybean	cytosol, peroxisome, plasma membrane	57.57	58.67
KRH08960	Soybean	plastid	22.62	57.89
Os02t0642700-01	Rice	plastid	50.47	56.96
KRH09051	Soybean	cytosol, nucleus, plasma membrane	28.6	56.67
PGSC0003DMT400037089	Potato	endoplasmic reticulum, golgi, vacuole	53.46	55.64
Solyc03g025760.2.1	Tomato	endoplasmic reticulum, golgi	53.27	55.45
KRH38478	Soybean	cytosol	60.19	54.86
CDY69828	Canola	mitochondrion	38.69	53.91
Solyc03g025770.2.1	Tomato	endoplasmic reticulum, golgi, vacuole	49.72	53.41
HORVU6Hr1G060750.4	Barley	cytosol, peroxisome	49.53	53.32
TraesCS2B01G093400.1	Wheat	golgi, mitochondrion, plastid	49.91	53.19
KRH08953	Soybean	cytosol, extracellular, nucleus	14.21	52.41
CDX71752	Canola	cytosol	41.12	51.16
KRG88606	Soybean	cytosol	20.56	51.16
TraesCS6A01G237500.1	Wheat	cytosol, mitochondrion	44.49	50.75
Zm00001d051287_P001	Maize	plastid	51.96	50.45
EES07545	Sorghum	plastid	51.78	50.18
TraesCS6D01G220200.2	Wheat	cytosol, mitochondrion	44.67	49.9
Zm00001d002836_P006	Maize	plastid	50.28	49.72
CDY58789	Canola	endoplasmic reticulum, golgi	45.98	49.4
EES11181	Sorghum	plastid	51.22	49.37
CDX71753	Canola	endoplasmic reticulum	45.23	49.29
CDY48932	Canola	endoplasmic reticulum	45.05	49.08
TraesCSU01G025200.1	Wheat	plastid	51.4	48.85
CDY45704	Canola	endoplasmic reticulum, golgi	45.42	48.8
KRG88612	Soybean	cytosol	25.42	48.57
Os04t0534100-01	Rice	mitochondrion	39.25	47.95
CDX89107	Canola	mitochondrion	40.93	47.82
TraesCS2D01G365600.1	Wheat	plastid	49.53	47.75
TraesCS2B01G386200.1	Wheat	plastid	49.16	47.56
TraesCS2A01G368900.2	Wheat	plastid	49.16	47.39
CDY18897	Canola	golgi, mitochondrion, plastid, vacuole	45.05	47.16
CDY37069	Canola	golgi	45.79	46.85
CDY27355	Canola	golgi, mitochondrion, nucleus, plasma membrane, plastid	45.79	46.4
TraesCS6B01G266000.1	Wheat	plastid	51.4	45.01
CDY48930	Canola	plasma membrane	43.93	44.34
CDX71750	Canola	plasma membrane	42.99	44.23
CDX71749	Canola	cytosol, golgi, plasma membrane	34.95	43.09
CDY18896	Canola	golgi, plasma membrane, plastid	31.59	42.89
CDY25494	Canola	mitochondrion	45.42	41.97
CDY09932	Canola	endoplasmic reticulum, golgi	37.57	39.88
CDY59071	Canola	endoplasmic reticulum, golgi, vacuole	37.76	39.76
CDY10259	Canola	mitochondrion	37.38	39.76
CDY48931	Canola	plasma membrane	24.11	39.33
CDY06688	Canola	mitochondrion	37.01	39.29
KRG88496	Soybean	cytosol	12.15	37.14
CDX74769	Canola	mitochondrion, peroxisome, plasma membrane, plastid	43.36	36.36
KRH09043	Soybean	cytosol, golgi, mitochondrion, plastid	12.34	36.26
CDY42493	Canola	cytosol	40.56	25.09

Protein Annotations

EnsemblPlants:CDX80388	EnsemblPlantsGene:GSBRNA2T00133453001	GO:A0A078CZ22	InterPro:LipoPS_modifying	PANTHER:PTHR12203	PANTHER:PTHR12203:SF59
PFAM:PF05686	ProteinID:CDX80388	ProteinID:CDX80388.1	SEG:seg	SMART:SM00672	TMHMM:TMhelix
UniParc:UPI0004EEAC8C	MapMan:35.2	:	:	:	:

Description

BnaC07g30560D

Coordinates

chrLK031821:+:180785..183922

Molecular Weight (calculated)

61734.1 Da

IEP (calculated)

8.273

GRAVY (calculated)

-0.564

Length

535 amino acids

Sequence
(BLAST)

001: MRNSPSKNEP GGGHSRNFTN WSPFVKSSSG FGISPNRSYA LLSLLTLLIV GAFISTRILL DPTVLLEKEA VTTKTRSHTI FPKYPPPTPV TTQSPKPEFT
101: LHCSANDTNA TCPRNSYPAT ASFGEDTPTA TCPDYFRWIH EDLRPWAKTG ISREALERAK KTANFRLAIV GGRVYLEKFQ DAFQTRDVFT IWGFLQLLRK
201: YPGKIPDLEL MFDCVDWPVV RALNFAGVDA PSPPPLFRYC GNEETLDIVF PDWSFWGWSE VNIKPWESLL KELREGNQRT TWINREPYAY WKGNPSVADT
301: RQDLMKCNVS EEHEWNARVY AQDWIRESKE GYKQSDLASQ CHHRYKIYIE GSAWSVSEKY ILACDSVTLL VNPHYYDFFT RGLLPAHHYW PVREHDKCRS
401: IKFAVHWGNS HIQKAQDIGK TASEFIQQEL KMDYVYDYMY HLLTGYAKLL QFKPEIPQNA MEICSETMAC PRSGNERKFM TESLVKHPAE TGPCAMPPPY
501: DPASFYAVEK RKQSTTKRIL QWEMKYWNKQ NQTGS

Best Arabidopsis Sequence Match ( AT5G23850.1 )
(BLAST)

001: MRNSPSKNGS AGGHSRTYTD TIWSPFVKSG LGISPNRSYA LVSLLILLIV GAFISTRLLL DTTVLLEKKA ATTTTTKTQT QTITPKYPRP TTVITQSPKP
101: EFTLHCSANE TTASCPSNKY PTTTSFEDDD TNHPPTATCP DYFRWIHEDL RPWSRTGITR EALERAKKTA TFRLAIVGGK IYVEKFQDAF QTRDVFTIWG
201: FLQLLRKYPG KIPDLELMFD CVDWPVVRAT EFAGANAPSP PPLFRYCGNE ETLDIVFPDW SFWGWAEVNI KPWESLLKEL REGNERTKWI NREPYAYWKG
301: NPMVAETRQD LMKCNVSEEH EWNARLYAQD WIKESKEGYK QSDLASQCHH RYKIYIEGSA WSVSEKYILA CDSVTLLVKP HYYDFFTRGL LPAHHYWPVR
401: EHDKCRSIKF AVDWGNSHIQ KAQDIGKAAS DFIQQDLKMD YVYDYMYHLL TEYSKLLQFK PEIPRNAVEI CSETMACLRS GNERKFMTES LVKQPADSGP
501: CAMPPPYDPA TYYEVVKRKQ STNMRILQWE MKYWSKQNQT GS

Arabidopsis Description

At5g23850 [Source:UniProtKB/TrEMBL;Acc:Q9FF95]
SUBAcon: [mitochondrion,endoplasmic reticulum,plastid,peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.