Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, golgi, vacuole
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 6
- vacuole 6
- plasma membrane 5
- golgi 6
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_16s0050g00190.t01 | Wine grape | nucleus | 55.11 | 98.21 |
| VIT_02s0025g03710.t01 | Wine grape | cytosol | 40.68 | 74.63 |
| GSMUA_Achr5P12260_001 | Banana | mitochondrion | 54.31 | 71.32 |
| KRH08971 | Soybean | cytosol | 33.27 | 69.46 |
| PGSC0003DMT400037089 | Potato | endoplasmic reticulum, golgi, vacuole | 68.54 | 66.54 |
| Solyc03g025760.2.1 | Tomato | endoplasmic reticulum, golgi | 67.74 | 65.76 |
| KRH09038 | Soybean | cytosol | 35.07 | 64.81 |
| KRH08981 | Soybean | plastid | 49.3 | 64.74 |
| VIT_15s0046g03110.t01 | Wine grape | cytosol | 47.9 | 63.56 |
| KRH09011 | Soybean | cytosol | 67.54 | 63.11 |
| KRH09051 | Soybean | cytosol, nucleus, plasma membrane | 33.87 | 62.59 |
| Solyc03g025770.2.1 | Tomato | endoplasmic reticulum, golgi, vacuole | 61.32 | 61.45 |
| KRH08960 | Soybean | plastid | 25.65 | 61.24 |
| KRH09010 | Soybean | cytosol, peroxisome, plasma membrane | 64.13 | 60.95 |
| VIT_15s0046g03120.t01 | Wine grape | cytosol | 52.51 | 60.79 |
| Os02t0642700-01 | Rice | plastid | 57.72 | 60.76 |
| VIT_15s0046g03080.t01 | Wine grape | cytosol | 51.3 | 60.52 |
| VIT_15s0046g03140.t01 | Wine grape | cytosol | 28.06 | 60.09 |
| VIT_15s0046g03050.t01 | Wine grape | cytosol | 50.7 | 59.81 |
| AT5G23850.1 | Thale cress | endoplasmic reticulum, mitochondrion, peroxisome, plastid | 64.33 | 59.23 |
| Bra009709.1-P | Field mustard | plastid | 62.93 | 58.8 |
| CDX88050 | Canola | plastid | 62.73 | 58.61 |
| HORVU6Hr1G060750.4 | Barley | cytosol, peroxisome | 58.12 | 58.35 |
| CDX80388 | Canola | plastid | 62.32 | 58.13 |
| Bra018021.1-P | Field mustard | golgi | 62.53 | 57.78 |
| AT3G48980.2 | Thale cress | plastid | 62.53 | 57.25 |
| KRH08953 | Soybean | cytosol, extracellular, nucleus | 16.63 | 57.24 |
| CDY08097 | Canola | plastid | 62.73 | 57.22 |
| VIT_15s0046g03130.t01 | Wine grape | cytosol | 25.45 | 57.21 |
| CDY05887 | Canola | golgi | 62.53 | 57.04 |
| KRH38478 | Soybean | cytosol | 66.93 | 56.9 |
| VIT_15s0046g03150.t01 | Wine grape | golgi | 59.12 | 56.84 |
| VIT_15s0046g03100.t01 | Wine grape | mitochondrion | 14.43 | 56.25 |
| TraesCS6A01G237500.1 | Wheat | cytosol, mitochondrion | 51.7 | 55.01 |
| TraesCS2B01G093400.1 | Wheat | golgi, mitochondrion, plastid | 54.91 | 54.58 |
| Zm00001d002836_P006 | Maize | plastid | 59.12 | 54.53 |
| TraesCS6D01G220200.2 | Wheat | cytosol, mitochondrion | 52.1 | 54.28 |
| KRG88606 | Soybean | cytosol | 23.25 | 53.95 |
| TraesCS2B01G386200.1 | Wheat | plastid | 59.72 | 53.89 |
| TraesCS2D01G365600.1 | Wheat | plastid | 59.72 | 53.69 |
| EES11181 | Sorghum | plastid | 59.72 | 53.69 |
| VIT_02s0025g03720.t01 | Wine grape | endoplasmic reticulum, extracellular, plasma membrane | 23.45 | 52.94 |
| KRG88612 | Soybean | cytosol | 29.66 | 52.86 |
| TraesCS2A01G368900.2 | Wheat | plastid | 58.52 | 52.61 |
| Zm00001d051287_P001 | Maize | plastid | 57.92 | 52.45 |
| VIT_15s0046g03070.t01 | Wine grape | golgi | 55.11 | 52.38 |
| EES07545 | Sorghum | plastid | 56.71 | 51.27 |
| Os04t0534100-01 | Rice | mitochondrion | 44.49 | 50.68 |
| TraesCSU01G025200.1 | Wheat | plastid | 56.91 | 50.44 |
| TraesCS6B01G266000.1 | Wheat | plastid | 60.12 | 49.1 |
| VIT_15s0046g03090.t01 | Wine grape | cytoskeleton, golgi, nucleus | 51.9 | 48.23 |
| KRG88496 | Soybean | cytosol | 15.23 | 43.43 |
| VIT_15s0046g03060.t01 | Wine grape | cytosol | 10.22 | 42.86 |
| VIT_06s0004g06630.t01 | Wine grape | plasma membrane | 37.47 | 40.3 |
| KRH09043 | Soybean | cytosol, golgi, mitochondrion, plastid | 14.63 | 40.11 |
Protein Annotations
| EntrezGene:100250543 | wikigene:100250543 | MapMan:35.2 | EMBL:AM439615 | ProteinID:CAN69493 | ProteinID:CAN69493.1 |
| ProteinID:CCB47889 | ProteinID:CCB47889.1 | UniProt:F6H6P6 | EMBL:FN595243 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005575 | GO:GO:0005623 | GO:GO:0006629 | GO:GO:0006664 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0012505 | GO:GO:0016740 | GO:GO:0046527 | EntrezGene:LOC100250543 | wikigene:LOC100250543 |
| InterPro:LipoPS_modifying | PFAM:PF05686 | PANTHER:PTHR12203 | PANTHER:PTHR12203:SF59 | SMART:SM00672 | TMHMM:TMhelix |
| UniParc:UPI000210871C | ArrayExpress:VIT_16s0050g00160 | EnsemblPlantsGene:VIT_16s0050g00160 | EnsemblPlants:VIT_16s0050g00160.t01 | RefSeq:XP_002268245 | RefSeq:XP_002268245.1 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr16:+:16992505..16995418
Molecular Weight (calculated)
58164.0 Da
IEP (calculated)
9.079
GRAVY (calculated)
-0.481
Length
499 amino acids
Sequence
(BLAST)
(BLAST)
001: MKAPARSSAI LFFFLFLFIG AFLSTRLLDS ATSLPTTSVE KPILPTGTAH KPFKIPKKPP VKIEYPLNCS AGNLTRTCPR NYPTAFSPED PDRPSPPECP
101: HYFRWIYGDL RPWMKSGITR EMVERAKRTA TFKLVILNGR AYVEKYQRAF QTRDVFTLWG ILQLLRRYPG KVPDLELMFD CVDWPVIQSN EYRGPNATAP
201: PPLFRYCGDD ATLDIVFPDW SFWGWPEINI KPWESLLKDL KEGNKRSRWM EREPYAYWKG NPAVAATRLD LLKCNVSDKQ DWNARVYTQD WILESQEGYK
301: QSDLASQCIH RYKIYIEGSA WSVSQKYILA CDSVTLLVKP HYYDFFTRSL MPVHHYWPIR EDDKCRSIKF AVDWGNRHKQ KAQSIGKAAS DFIQEDLKMD
401: NVYDYMFHLL NEYAKLLKFK PTVPEKAVEL CSERMGCGAE GLKKKFMMES MVKYPMDASP CTMPPPFSPL ELQTFLNRKV NSIKQVEAWE KKFWENQNT
101: HYFRWIYGDL RPWMKSGITR EMVERAKRTA TFKLVILNGR AYVEKYQRAF QTRDVFTLWG ILQLLRRYPG KVPDLELMFD CVDWPVIQSN EYRGPNATAP
201: PPLFRYCGDD ATLDIVFPDW SFWGWPEINI KPWESLLKDL KEGNKRSRWM EREPYAYWKG NPAVAATRLD LLKCNVSDKQ DWNARVYTQD WILESQEGYK
301: QSDLASQCIH RYKIYIEGSA WSVSQKYILA CDSVTLLVKP HYYDFFTRSL MPVHHYWPIR EDDKCRSIKF AVDWGNRHKQ KAQSIGKAAS DFIQEDLKMD
401: NVYDYMFHLL NEYAKLLKFK PTVPEKAVEL CSERMGCGAE GLKKKFMMES MVKYPMDASP CTMPPPFSPL ELQTFLNRKV NSIKQVEAWE KKFWENQNT
001: MRNSPSKNGS AGGHSRTYTD TIWSPFVKSG LGISPNRSYA LVSLLILLIV GAFISTRLLL DTTVLLEKKA ATTTTTKTQT QTITPKYPRP TTVITQSPKP
101: EFTLHCSANE TTASCPSNKY PTTTSFEDDD TNHPPTATCP DYFRWIHEDL RPWSRTGITR EALERAKKTA TFRLAIVGGK IYVEKFQDAF QTRDVFTIWG
201: FLQLLRKYPG KIPDLELMFD CVDWPVVRAT EFAGANAPSP PPLFRYCGNE ETLDIVFPDW SFWGWAEVNI KPWESLLKEL REGNERTKWI NREPYAYWKG
301: NPMVAETRQD LMKCNVSEEH EWNARLYAQD WIKESKEGYK QSDLASQCHH RYKIYIEGSA WSVSEKYILA CDSVTLLVKP HYYDFFTRGL LPAHHYWPVR
401: EHDKCRSIKF AVDWGNSHIQ KAQDIGKAAS DFIQQDLKMD YVYDYMYHLL TEYSKLLQFK PEIPRNAVEI CSETMACLRS GNERKFMTES LVKQPADSGP
501: CAMPPPYDPA TYYEVVKRKQ STNMRILQWE MKYWSKQNQT GS
101: EFTLHCSANE TTASCPSNKY PTTTSFEDDD TNHPPTATCP DYFRWIHEDL RPWSRTGITR EALERAKKTA TFRLAIVGGK IYVEKFQDAF QTRDVFTIWG
201: FLQLLRKYPG KIPDLELMFD CVDWPVVRAT EFAGANAPSP PPLFRYCGNE ETLDIVFPDW SFWGWAEVNI KPWESLLKEL REGNERTKWI NREPYAYWKG
301: NPMVAETRQD LMKCNVSEEH EWNARLYAQD WIKESKEGYK QSDLASQCHH RYKIYIEGSA WSVSEKYILA CDSVTLLVKP HYYDFFTRGL LPAHHYWPVR
401: EHDKCRSIKF AVDWGNSHIQ KAQDIGKAAS DFIQQDLKMD YVYDYMYHLL TEYSKLLQFK PEIPRNAVEI CSETMACLRS GNERKFMTES LVKQPADSGP
501: CAMPPPYDPA TYYEVVKRKQ STNMRILQWE MKYWSKQNQT GS
Arabidopsis Description
At5g23850 [Source:UniProtKB/TrEMBL;Acc:Q9FF95]
SUBAcon: [mitochondrion,endoplasmic reticulum,plastid,peroxisome]
SUBAcon: [mitochondrion,endoplasmic reticulum,plastid,peroxisome]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.