Factsheet for TraesCS6B01G266000.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
endoplasmic reticulum 2
extracellular 1
golgi 2
plasma membrane 1
vacuole 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid, secretory
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	endoplasmic reticulum
Predotar:	plastid
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU6Hr1G060750.4	Barley	cytosol, peroxisome	74.8	91.95
TraesCS6A01G237500.1	Wheat	cytosol, mitochondrion	69.72	90.83
TraesCS6D01G220200.2	Wheat	cytosol, mitochondrion	70.54	89.98
TraesCS2B01G093400.1	Wheat	golgi, mitochondrion, plastid	69.07	84.06
Os02t0642700-01	Rice	plastid	65.14	83.97
EES07545	Sorghum	plastid	73.98	81.88
Zm00001d051287_P001	Maize	plastid	73.16	81.13
GSMUA_Achr5P12260_001	Banana	mitochondrion	41.08	66.05
TraesCS2B01G386200.1	Wheat	plastid	59.74	66.0
VIT_16s0050g00190.t01	Wine grape	nucleus	29.79	65.0
VIT_02s0025g03710.t01	Wine grape	cytosol	28.15	63.24
VIT_16s0050g00160.t01	Wine grape	endoplasmic reticulum, golgi, vacuole	49.1	60.12
PGSC0003DMT400000701	Potato	mitochondrion	7.53	59.74
KRH65106	Soybean	cytosol	16.86	59.54
KRH08971	Soybean	cytosol	22.75	58.16
VIT_15s0046g03110.t01	Wine grape	cytosol	34.86	56.65
VIT_15s0046g03080.t01	Wine grape	cytosol	38.79	56.03
KRH09038	Soybean	cytosol	24.55	55.56
KRH08981	Soybean	plastid	34.53	55.53
VIT_15s0046g03050.t01	Wine grape	cytosol	38.13	55.08
VIT_15s0046g03140.t01	Wine grape	cytosol	20.95	54.94
VIT_15s0046g03120.t01	Wine grape	cytosol	38.63	54.76
PGSC0003DMT400037089	Potato	endoplasmic reticulum, golgi, vacuole	45.99	54.67
Solyc03g025770.2.1	Tomato	endoplasmic reticulum, golgi, vacuole	44.19	54.22
VIT_15s0046g03100.t01	Wine grape	mitochondrion	11.29	53.91
Solyc03g025780.2.1	Tomato	golgi	44.52	53.65
CDY69828	Canola	mitochondrion	33.39	53.12
KRH09010	Soybean	cytosol, peroxisome, plasma membrane	45.5	52.95
AT5G23850.1	Thale cress	endoplasmic reticulum, mitochondrion, peroxisome, plastid	46.97	52.95
Solyc03g025760.2.1	Tomato	endoplasmic reticulum, golgi	44.52	52.92
KRH09011	Soybean	cytosol	46.15	52.81
KRH08960	Soybean	plastid	18.0	52.63
KRH09051	Soybean	cytosol, nucleus, plasma membrane	23.24	52.59
Bra009709.1-P	Field mustard	plastid	45.34	51.87
CDX88050	Canola	plastid	45.17	51.69
VIT_15s0046g03150.t01	Wine grape	golgi	43.86	51.64
CDX80388	Canola	plastid	45.01	51.4
KRH48182	Soybean	cytosol, golgi, plasma membrane	42.55	50.98
KRH65107	Soybean	cytosol	12.77	50.98
KRH40487	Soybean	cytosol	28.64	50.43
AT3G48980.2	Thale cress	plastid	44.84	50.28
Bra018021.1-P	Field mustard	golgi	44.35	50.19
CDX71752	Canola	cytosol	35.19	50.0
KRH65090	Soybean	extracellular	38.63	49.58
CDY05887	Canola	golgi	44.35	49.54
CDY08097	Canola	plastid	44.35	49.54
Bra007591.1-P	Field mustard	cytosol	34.86	49.53
Solyc01g094390.2.1	Tomato	endoplasmic reticulum, golgi, vacuole	38.13	49.36
KRH77521	Soybean	endoplasmic reticulum, nucleus, plasma membrane, plastid	41.57	48.66
KRH38478	Soybean	cytosol	46.32	48.21
CDY45704	Canola	endoplasmic reticulum, golgi	39.12	47.99
Bra007590.1-P	Field mustard	cytosol	38.46	47.86
Bra003444.1-P	Field mustard	endoplasmic reticulum, golgi	38.95	47.79
CDY58789	Canola	endoplasmic reticulum, golgi	38.95	47.79
Bra007592.1-P	Field mustard	cytosol	26.19	47.76
CDY48932	Canola	endoplasmic reticulum	38.3	47.66
AT3G61290.1	Thale cress	cytosol	35.35	47.47
CDX71753	Canola	endoplasmic reticulum	38.13	47.45
VIT_15s0046g03070.t01	Wine grape	golgi	40.75	47.43
VIT_15s0046g03130.t01	Wine grape	cytosol	17.18	47.3
Solyc01g094380.2.1	Tomato	cytosol, extracellular, golgi, plastid	39.61	47.17
KRH48168	Soybean	plasma membrane	37.81	46.48
KRH08953	Soybean	cytosol, extracellular, nucleus	10.97	46.21
KRG88606	Soybean	cytosol	16.2	46.05
KRH65092	Soybean	endoplasmic reticulum, plasma membrane, vacuole	37.64	46.0
AT3G61270.1	Thale cress	cytosol, golgi, plasma membrane	37.48	45.98
KRH00707	Soybean	cytosol	27.5	45.9
VIT_02s0025g03720.t01	Wine grape	endoplasmic reticulum, extracellular, plasma membrane	16.53	45.7
KRG88612	Soybean	cytosol	20.79	45.36
CDY37069	Canola	golgi	38.79	45.32
CDY27355	Canola	golgi, mitochondrion, nucleus, plasma membrane, plastid	38.79	44.89
CDX89107	Canola	mitochondrion	33.55	44.76
CDY18897	Canola	golgi, mitochondrion, plastid, vacuole	37.32	44.62
AT2G45830.1	Thale cress	mitochondrion	38.13	44.55
VIT_15s0046g03090.t01	Wine grape	cytoskeleton, golgi, nucleus	38.79	44.13
PGSC0003DMT400055754	Potato	nucleus	10.97	44.08
AT2G45840.1	Thale cress	plasma membrane	37.15	43.4
AT1G63420.1	Thale cress	mitochondrion	40.43	42.73
Bra027639.1-P	Field mustard	mitochondrion	40.1	42.39
CDY25494	Canola	mitochondrion	39.93	42.14
CDY18896	Canola	golgi, plasma membrane, plastid	27.17	42.13
Bra007593.1-P	Field mustard	endoplasmic reticulum, nucleus, plasma membrane	36.5	42.08
CDY48930	Canola	plasma membrane	36.5	42.08
AT3G61280.1	Thale cress	plasma membrane	36.82	41.98
CDX71749	Canola	cytosol, golgi, plasma membrane	29.62	41.71
CDX71750	Canola	plasma membrane	35.35	41.54
TraesCS1B01G117800.1	Wheat	mitochondrion	32.41	40.82
Solyc05g048800.1.1	Tomato	cytosol	16.2	40.74
TraesCS7B01G317100.1	Wheat	endoplasmic reticulum	35.84	40.41
VIT_15s0046g03060.t01	Wine grape	cytosol	7.86	40.34
Bra039310.1-P	Field mustard	golgi, mitochondrion	28.48	40.28
TraesCS7B01G229100.2	Wheat	cytosol, endoplasmic reticulum, plastid	38.13	40.03
CDY48931	Canola	plasma membrane	20.29	37.8
KRG88496	Soybean	cytosol	10.31	36.0
Bra004942.1-P	Field mustard	mitochondrion, peroxisome, plasma membrane, plastid	36.5	34.95
CDX74769	Canola	mitochondrion, peroxisome, plasma membrane, plastid	36.33	34.8
KRH09043	Soybean	cytosol, golgi, mitochondrion, plastid	9.82	32.97
PGSC0003DMT400000098	Potato	cytosol	38.95	27.45
CDY42493	Canola	cytosol	32.73	23.12

Protein Annotations

EnsemblPlants:TraesCS6B01G266000.1	EnsemblPlantsGene:TraesCS6B01G266000	InterPro:LipoPS_modifying	ncoils:Coil	PANTHER:PTHR12203	PANTHER:PTHR12203:SF33
PFAM:PF05686	SEG:seg	SMART:SM00672	TMHMM:TMhelix	MapMan:35.2	:

Description

No Description!

Coordinates

chr6B:+:478465550..478469045

Molecular Weight (calculated)

68910.5 Da

IEP (calculated)

7.995

GRAVY (calculated)

-0.552

Length

611 amino acids

Sequence
(BLAST)

001: MATAAADAAA AVPDARRWSK AGPSSPVTTA IFLFFFVVVV GVLVSARWIT TTTHLAITNL DQWRTQPAIL TATLTTSIPA IPAGPPPPRP TYSLSCSAPP
101: LTRDPDIPSN ISQTLSLALS SNATCASVPD PQPIPPAAAA DADANATCPT YFRFIHEDLH PWRAVGGITR AMLDRARATA NFRLVVLRGR AYIERIAPAF
201: QTRDLFTIWG ILQLLRRYPG RVPDLDLMFD CVDWPVVHAD EYQGDNATAM PPLFRYCGDN ETLDVVFPDW SFWGWAEINI KPWDALQKDL NEGNKKVRWI
301: DREPYAYWKG NPDVAAIRQE LVKCNVSSEQ EWNARIFKQD WIKESKAGYK KSNLASQCTH RYKIYIEGSA WSVSEKYILA CDSMTLVIKP KYYDFFSRVL
401: MPTQHYWPVR DDNKCGSIKY AVDWGNSHKK KAHQIGKKAS KFIQQELSMD YIYDYMFHLL TEYAKLLRFK PTKPPEAVEV CPESLACQAI GREKKFMQDS
501: MVKSANVAGP CNLPPPFSPE EYKKLQQRKE KSIKQVETLD QNASKLEERN SSKPEDSNPG ERNASKPEDS NPEERNASKP EEQNASKPED SNPKERNASK
601: PEERNAAKPE E

Best Arabidopsis Sequence Match ( AT5G23850.1 )
(BLAST)

001: MRNSPSKNGS AGGHSRTYTD TIWSPFVKSG LGISPNRSYA LVSLLILLIV GAFISTRLLL DTTVLLEKKA ATTTTTKTQT QTITPKYPRP TTVITQSPKP
101: EFTLHCSANE TTASCPSNKY PTTTSFEDDD TNHPPTATCP DYFRWIHEDL RPWSRTGITR EALERAKKTA TFRLAIVGGK IYVEKFQDAF QTRDVFTIWG
201: FLQLLRKYPG KIPDLELMFD CVDWPVVRAT EFAGANAPSP PPLFRYCGNE ETLDIVFPDW SFWGWAEVNI KPWESLLKEL REGNERTKWI NREPYAYWKG
301: NPMVAETRQD LMKCNVSEEH EWNARLYAQD WIKESKEGYK QSDLASQCHH RYKIYIEGSA WSVSEKYILA CDSVTLLVKP HYYDFFTRGL LPAHHYWPVR
401: EHDKCRSIKF AVDWGNSHIQ KAQDIGKAAS DFIQQDLKMD YVYDYMYHLL TEYSKLLQFK PEIPRNAVEI CSETMACLRS GNERKFMTES LVKQPADSGP
501: CAMPPPYDPA TYYEVVKRKQ STNMRILQWE MKYWSKQNQT GS

Arabidopsis Description

At5g23850 [Source:UniProtKB/TrEMBL;Acc:Q9FF95]
SUBAcon: [plastid,endoplasmic reticulum,peroxisome,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.