Factsheet for PGSC0003DMT400000098

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g094390.2.1	Tomato	endoplasmic reticulum, golgi, vacuole	49.94	91.74
VIT_15s0046g03080.t01	Wine grape	cytosol	28.14	57.68
VIT_15s0046g03050.t01	Wine grape	cytosol	27.91	57.21
VIT_15s0046g03120.t01	Wine grape	cytosol	27.91	56.15
GSMUA_Achr5P12260_001	Banana	mitochondrion	24.45	55.79
PGSC0003DMT400000701	Potato	mitochondrion	4.61	51.95
PGSC0003DMT400037089	Potato	endoplasmic reticulum, golgi, vacuole	30.33	51.17
Os02t0642700-01	Rice	plastid	26.87	49.16
TraesCS2B01G093400.1	Wheat	golgi, mitochondrion, plastid	27.45	47.41
VIT_15s0046g03070.t01	Wine grape	golgi	28.6	47.24
HORVU6Hr1G060750.4	Barley	cytosol, peroxisome	26.53	46.28
PGSC0003DMT400055754	Potato	nucleus	7.96	45.39
TraesCS6A01G237500.1	Wheat	cytosol, mitochondrion	23.64	43.71
VIT_15s0046g03090.t01	Wine grape	cytoskeleton, golgi, nucleus	26.99	43.58
Zm00001d051287_P001	Maize	plastid	27.68	43.56
EES07545	Sorghum	plastid	27.57	43.3
TraesCS6D01G220200.2	Wheat	cytosol, mitochondrion	23.88	43.22
TraesCSU01G025200.1	Wheat	plastid	28.03	43.16
TraesCS2B01G386200.1	Wheat	plastid	27.22	42.68
TraesCS2D01G365600.1	Wheat	plastid	27.11	42.34
TraesCS2A01G368900.2	Wheat	plastid	26.87	41.98
Zm00001d002836_P006	Maize	plastid	26.18	41.96
EES11181	Sorghum	plastid	26.53	41.44
Os04t0534100-01	Rice	mitochondrion	20.76	41.1
TraesCS6B01G266000.1	Wheat	plastid	27.45	38.95
PGSC0003DMT400078044	Potato	endoplasmic reticulum, golgi, mitochondrion	20.65	38.66

Protein Annotations

EnsemblPlants:PGSC0003DMT400000098	EnsemblPlantsGene:PGSC0003DMG400000028	EntrezGene:102586328	InterPro:LipoPS_modifying	ncoils:Coil	PANTHER:PTHR12203
PANTHER:PTHR12203:SF28	PFAM:PF05686	PGSC:PGSC0003DMG400000028	SMART:SM00672	UniParc:UPI000295B7AA	UniProt:M0ZG37
MapMan:35.2	:	:	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400000028]

Coordinates

chr1:+:71954985..71963036

Molecular Weight (calculated)

101370.0 Da

IEP (calculated)

8.894

GRAVY (calculated)

-0.622

Length

867 amino acids

Sequence
(BLAST)

001: MYDYITKGCG AVDEYAPPLN RALGCGKSKL PSFKMYDFGA VDESASPLNR ALGCGKSLPG SRKRFSPMGP YTAKYTSHFY KKVAAPTIQP QILEFPLDCS
101: AWNQSNKCPI NYPTSYKPLN PNNSTCPEYF RWIHEDLKPW KETGITREML EKGKRNAHFR WYPGKLPNLE IMFDTDDRPV VRSKDYRKPN SGPPPLFRYC
201: SDWHSLDIVF PDWSFWGWAE TNIRPWRSVI KEIKEGNKRT KWKDRVPFAY WKGNPHVSPI RKDLMKCNIT DKQNFHTLLY VQDWDDQSKK GFKESDLANQ
301: CTHRYKIYVE GWAWSVSEKY ILACDSPTLY IKPHFHDFFM RGMIPQQHYW PIRENNKCGS LNFAVQWGNN HTHKAEAIGK AGSDFIHEDM KMEYVFDYIF
401: HLLNEYAKLL KFEPKIPSEA VEICSESLAC TSQGSLEKSN KVDIFPEVSC SIKCPRVSPM KPEFRASSES CPEYFRWIHE DLRPWKETGI TRKMVEKARE
501: VAHFRVVVVN GRVYFDKYKA TFQKRDIVTL WGILQLLSFY PGMLPDLDLV FECGDQPVTQ RSDYGKSKDS IPPPLFHYCG NRSSFDIVFP DWSFWGWPEL
601: SIRPWDKLEK DLQQSNEMIK WTEREPYAYW KGNAVLGEAR RDLIKCNVSG KQDWNARIYG LQWALERRQG YKTSDLATQC THRYKIYVEG LAWSVSQKYI
701: LACDSVALLI NPHYYDFYTR SLLPTVHYWP INEKDKCKSI KFAVDWGNKN AKKAQEIGKA GSKFVHEELQ MKYIYDYMFH LLTEYAKLLK YKPTIPRDAV
801: EVCSDTLICS TKGIRKKFRV HSRINNVSSS EPCTMPPSWS PADLQNFIDR KQNLTKQVEL WEEAQSI

Best Arabidopsis Sequence Match ( AT5G23850.1 )
(BLAST)

001: MRNSPSKNGS AGGHSRTYTD TIWSPFVKSG LGISPNRSYA LVSLLILLIV GAFISTRLLL DTTVLLEKKA ATTTTTKTQT QTITPKYPRP TTVITQSPKP
101: EFTLHCSANE TTASCPSNKY PTTTSFEDDD TNHPPTATCP DYFRWIHEDL RPWSRTGITR EALERAKKTA TFRLAIVGGK IYVEKFQDAF QTRDVFTIWG
201: FLQLLRKYPG KIPDLELMFD CVDWPVVRAT EFAGANAPSP PPLFRYCGNE ETLDIVFPDW SFWGWAEVNI KPWESLLKEL REGNERTKWI NREPYAYWKG
301: NPMVAETRQD LMKCNVSEEH EWNARLYAQD WIKESKEGYK QSDLASQCHH RYKIYIEGSA WSVSEKYILA CDSVTLLVKP HYYDFFTRGL LPAHHYWPVR
401: EHDKCRSIKF AVDWGNSHIQ KAQDIGKAAS DFIQQDLKMD YVYDYMYHLL TEYSKLLQFK PEIPRNAVEI CSETMACLRS GNERKFMTES LVKQPADSGP
501: CAMPPPYDPA TYYEVVKRKQ STNMRILQWE MKYWSKQNQT GS

Arabidopsis Description

At5g23850 [Source:UniProtKB/TrEMBL;Acc:Q9FF95]
SUBAcon: [plastid,endoplasmic reticulum,peroxisome,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.