Subcellular Localization
min:
: max
Winner_takes_all: golgi, cytoskeleton, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- golgi 2
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- cytoskeleton 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
VIT_15s0046g03080.t01 | Wine grape | cytosol | 49.16 | 62.41 |
VIT_15s0046g03050.t01 | Wine grape | cytosol | 48.6 | 61.7 |
VIT_15s0046g03120.t01 | Wine grape | cytosol | 48.6 | 60.56 |
VIT_16s0050g00190.t01 | Wine grape | nucleus | 30.91 | 59.29 |
GSMUA_Achr5P12260_001 | Banana | mitochondrion | 41.71 | 58.95 |
VIT_02s0025g03710.t01 | Wine grape | cytosol | 29.61 | 58.46 |
VIT_15s0046g03140.t01 | Wine grape | cytosol | 24.02 | 55.36 |
VIT_15s0046g03070.t01 | Wine grape | golgi | 52.51 | 53.71 |
VIT_15s0046g03110.t01 | Wine grape | cytosol | 37.24 | 53.19 |
VIT_15s0046g03100.t01 | Wine grape | mitochondrion | 12.66 | 53.12 |
VIT_16s0050g00160.t01 | Wine grape | endoplasmic reticulum, golgi, vacuole | 48.23 | 51.9 |
Solyc01g094390.2.1 | Tomato | endoplasmic reticulum, golgi, vacuole | 43.2 | 49.15 |
Os02t0642700-01 | Rice | plastid | 43.02 | 48.73 |
VIT_15s0046g03150.t01 | Wine grape | golgi | 46.0 | 47.59 |
VIT_15s0046g03130.t01 | Wine grape | cytosol | 19.55 | 47.3 |
TraesCS2B01G093400.1 | Wheat | golgi, mitochondrion, plastid | 43.76 | 46.81 |
HORVU6Hr1G060750.4 | Barley | cytosol, peroxisome | 42.27 | 45.67 |
TraesCS6A01G237500.1 | Wheat | cytosol, mitochondrion | 39.66 | 45.42 |
TraesCS6D01G220200.2 | Wheat | cytosol, mitochondrion | 39.85 | 44.68 |
VIT_15s0046g03060.t01 | Wine grape | cytosol | 9.87 | 44.54 |
Zm00001d002836_P006 | Maize | plastid | 43.76 | 43.44 |
Os04t0534100-01 | Rice | mitochondrion | 35.38 | 43.38 |
EES07545 | Sorghum | plastid | 44.32 | 43.12 |
EES11181 | Sorghum | plastid | 44.51 | 43.06 |
Zm00001d051287_P001 | Maize | plastid | 44.13 | 43.01 |
TraesCSU01G025200.1 | Wheat | plastid | 44.69 | 42.63 |
VIT_02s0025g03720.t01 | Wine grape | endoplasmic reticulum, extracellular, plasma membrane | 17.5 | 42.53 |
TraesCS2D01G365600.1 | Wheat | plastid | 43.58 | 42.16 |
TraesCS2B01G386200.1 | Wheat | plastid | 43.39 | 42.13 |
TraesCS2A01G368900.2 | Wheat | plastid | 42.83 | 41.44 |
TraesCS6B01G266000.1 | Wheat | plastid | 44.13 | 38.79 |
VIT_06s0004g06630.t01 | Wine grape | plasma membrane | 31.28 | 36.21 |
PGSC0003DMT400000098 | Potato | cytosol | 43.58 | 26.99 |
Protein Annotations
EntrezGene:100263719 | wikigene:100263719 | MapMan:35.2 | ProteinID:CCB62396 | ProteinID:CCB62396.1 | ncoils:Coil |
UniProt:F6I600 | EMBL:FN596755 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0005623 |
GO:GO:0006629 | GO:GO:0006664 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0012505 |
GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016740 | GO:GO:0046527 | EntrezGene:LOC100263719 | wikigene:LOC100263719 |
InterPro:LipoPS_modifying | PFAM:PF05686 | PANTHER:PTHR12203 | PANTHER:PTHR12203:SF59 | SMART:SM00672 | TIGR:TC54368 |
TMHMM:TMhelix | UniParc:UPI000210AB51 | ArrayExpress:VIT_15s0046g03090 | EnsemblPlantsGene:VIT_15s0046g03090 | EnsemblPlants:VIT_15s0046g03090.t01 | unigene:Vvi.2935 |
RefSeq:XP_002271353 | RefSeq:XP_002271353.2 | RefSeq:XP_010661757.1 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr15:-:19702407..19708708
Molecular Weight (calculated)
61442.8 Da
IEP (calculated)
7.490
GRAVY (calculated)
-0.593
Length
537 amino acids
Sequence
(BLAST)
(BLAST)
001: MAASKADYEA VAHEELQKEE EGGGGGGGGG GEQEESVDEG GVEHGFWSHG SKLLSDLPES VGRQFKRGAS TTVPLFFVLL FIGAFFFIRW FDVSLFSGTS
101: LEKAFSTFQT TEENCTKENT TCSTKQHPLS GNACPDYFRW IYEDLRPWAE TGITQEMMEA AKDPAFFRLV ILDGKVYMEK YKGAFQTRDV FTIWGILQLL
201: KLYPGKVPDL ELMFECGDRP RIKATDYGGR KGKKKVPPLF HYCASDDTLD IVFPDWSFWG WPEINIKPWN SLRKELEEGN NRTKWMDREP YAYWKGNIRT
301: SGNRQALFKC RPSNNHDWNA RVYDMDWGRE SHEGFKDSNL ASQCTHKYKI YMEGIAWSVS EKYILACDSM SLVPRSRYYD FFTRSLQPTI HYWPIQQNDI
401: CRSVKYAVDW GNKHPQKAQK IGKAASNFVL EELKMNYVYD YMFHLLSEYA KLFKYKPTVP PGAIEIVPET MANTGGDLEK IYKNESSVKG PATTSPCTMP
501: PPYDPKALKA FLKRKDKVTR KVEKLEASGN LNKDISP
101: LEKAFSTFQT TEENCTKENT TCSTKQHPLS GNACPDYFRW IYEDLRPWAE TGITQEMMEA AKDPAFFRLV ILDGKVYMEK YKGAFQTRDV FTIWGILQLL
201: KLYPGKVPDL ELMFECGDRP RIKATDYGGR KGKKKVPPLF HYCASDDTLD IVFPDWSFWG WPEINIKPWN SLRKELEEGN NRTKWMDREP YAYWKGNIRT
301: SGNRQALFKC RPSNNHDWNA RVYDMDWGRE SHEGFKDSNL ASQCTHKYKI YMEGIAWSVS EKYILACDSM SLVPRSRYYD FFTRSLQPTI HYWPIQQNDI
401: CRSVKYAVDW GNKHPQKAQK IGKAASNFVL EELKMNYVYD YMFHLLSEYA KLFKYKPTVP PGAIEIVPET MANTGGDLEK IYKNESSVKG PATTSPCTMP
501: PPYDPKALKA FLKRKDKVTR KVEKLEASGN LNKDISP
001: MRNSPSKNGS AGGHSRTYTD TIWSPFVKSG LGISPNRSYA LVSLLILLIV GAFISTRLLL DTTVLLEKKA ATTTTTKTQT QTITPKYPRP TTVITQSPKP
101: EFTLHCSANE TTASCPSNKY PTTTSFEDDD TNHPPTATCP DYFRWIHEDL RPWSRTGITR EALERAKKTA TFRLAIVGGK IYVEKFQDAF QTRDVFTIWG
201: FLQLLRKYPG KIPDLELMFD CVDWPVVRAT EFAGANAPSP PPLFRYCGNE ETLDIVFPDW SFWGWAEVNI KPWESLLKEL REGNERTKWI NREPYAYWKG
301: NPMVAETRQD LMKCNVSEEH EWNARLYAQD WIKESKEGYK QSDLASQCHH RYKIYIEGSA WSVSEKYILA CDSVTLLVKP HYYDFFTRGL LPAHHYWPVR
401: EHDKCRSIKF AVDWGNSHIQ KAQDIGKAAS DFIQQDLKMD YVYDYMYHLL TEYSKLLQFK PEIPRNAVEI CSETMACLRS GNERKFMTES LVKQPADSGP
501: CAMPPPYDPA TYYEVVKRKQ STNMRILQWE MKYWSKQNQT GS
101: EFTLHCSANE TTASCPSNKY PTTTSFEDDD TNHPPTATCP DYFRWIHEDL RPWSRTGITR EALERAKKTA TFRLAIVGGK IYVEKFQDAF QTRDVFTIWG
201: FLQLLRKYPG KIPDLELMFD CVDWPVVRAT EFAGANAPSP PPLFRYCGNE ETLDIVFPDW SFWGWAEVNI KPWESLLKEL REGNERTKWI NREPYAYWKG
301: NPMVAETRQD LMKCNVSEEH EWNARLYAQD WIKESKEGYK QSDLASQCHH RYKIYIEGSA WSVSEKYILA CDSVTLLVKP HYYDFFTRGL LPAHHYWPVR
401: EHDKCRSIKF AVDWGNSHIQ KAQDIGKAAS DFIQQDLKMD YVYDYMYHLL TEYSKLLQFK PEIPRNAVEI CSETMACLRS GNERKFMTES LVKQPADSGP
501: CAMPPPYDPA TYYEVVKRKQ STNMRILQWE MKYWSKQNQT GS
Arabidopsis Description
At5g23850 [Source:UniProtKB/TrEMBL;Acc:Q9FF95]
SUBAcon: [mitochondrion,endoplasmic reticulum,plastid,peroxisome]
SUBAcon: [mitochondrion,endoplasmic reticulum,plastid,peroxisome]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.