Factsheet for VIT_15s0046g03050.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_15s0046g03080.t01	Wine grape	cytosol	78.96	78.96
VIT_15s0046g03120.t01	Wine grape	cytosol	78.72	77.26
VIT_15s0046g03070.t01	Wine grape	golgi	78.72	63.43
VIT_16s0050g00190.t01	Wine grape	nucleus	39.48	59.64
VIT_02s0025g03710.t01	Wine grape	cytosol	37.59	58.46
VIT_15s0046g03140.t01	Wine grape	cytosol	31.68	57.51
GSMUA_Achr5P12260_001	Banana	mitochondrion	50.12	55.79
VIT_15s0046g03110.t01	Wine grape	cytosol	47.52	53.46
VIT_15s0046g03100.t01	Wine grape	mitochondrion	15.84	52.34
Solyc01g094390.2.1	Tomato	endoplasmic reticulum, golgi, vacuole	56.74	50.85
VIT_16s0050g00160.t01	Wine grape	endoplasmic reticulum, golgi, vacuole	59.81	50.7
VIT_15s0046g03060.t01	Wine grape	cytosol	14.18	50.42
VIT_15s0046g03130.t01	Wine grape	cytosol	26.24	50.0
Os02t0642700-01	Rice	plastid	55.08	49.16
VIT_15s0046g03090.t01	Wine grape	cytoskeleton, golgi, nucleus	61.7	48.6
HORVU6Hr1G060750.4	Barley	cytosol, peroxisome	55.32	47.08
TraesCS2B01G093400.1	Wheat	golgi, mitochondrion, plastid	55.08	46.41
TraesCS6A01G237500.1	Wheat	cytosol, mitochondrion	50.35	45.42
VIT_15s0046g03150.t01	Wine grape	golgi	55.32	45.09
TraesCS6D01G220200.2	Wheat	cytosol, mitochondrion	50.35	44.47
Zm00001d051287_P001	Maize	plastid	56.5	43.38
Zm00001d002836_P006	Maize	plastid	54.85	42.88
EES07545	Sorghum	plastid	55.56	42.57
EES11181	Sorghum	plastid	55.08	41.98
TraesCSU01G025200.1	Wheat	plastid	55.79	41.92
TraesCS2B01G386200.1	Wheat	plastid	53.9	41.23
VIT_02s0025g03720.t01	Wine grape	endoplasmic reticulum, extracellular, plasma membrane	21.51	41.18
TraesCS2D01G365600.1	Wheat	plastid	53.66	40.9
TraesCS2A01G368900.2	Wheat	plastid	53.19	40.54
Os04t0534100-01	Rice	mitochondrion	40.9	39.5
TraesCS6B01G266000.1	Wheat	plastid	55.08	38.13
VIT_06s0004g06630.t01	Wine grape	plasma membrane	38.77	35.34
PGSC0003DMT400000098	Potato	cytosol	57.21	27.91

Protein Annotations

EntrezGene:100258547	wikigene:100258547	MapMan:35.2	ProteinID:CCB62400	ProteinID:CCB62400.1	UniProt:F6I604
EMBL:FN596755	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005623	GO:GO:0006629
GO:GO:0006664	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0012505	GO:GO:0016740
GO:GO:0046527	EntrezGene:LOC100258547	wikigene:LOC100258547	InterPro:LipoPS_modifying	PFAM:PF05686	PANTHER:PTHR12203
PANTHER:PTHR12203:SF59	SMART:SM00672	UniParc:UPI00015CA7F7	ArrayExpress:VIT_15s0046g03050	EnsemblPlantsGene:VIT_15s0046g03050	EnsemblPlants:VIT_15s0046g03050.t01
RefSeq:XP_002273475	RefSeq:XP_002273475.2	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr15:-:19689714..19691307

Molecular Weight (calculated)

49390.0 Da

IEP (calculated)

6.508

GRAVY (calculated)

-0.535

Length

423 amino acids

Sequence
(BLAST)

001: MAQTCPVTPL ATFEPSEPST ETCPEYFRWI YEDLRPWRET GITRDMVERA KPAAYIRVVV VDGKVYMEKY KGVYQTRDVF TIWGILQLLR MYPGKLPDFD
101: LMFSCGDKLA MKTRYFQGPN ATTPPPLFHY CGDDETYDIV FPDWSFWGWP EIHIKQWNTL KKDLKEGNNR TEWIDREPYA YWKGNINLGL ARHELSKCNK
201: TSEQDWNARI YDIDWRQEIH SGFNSSDLAS QCTHRYKIYT EGVTWSVSEK YILACDSVTL LANPHYYDFF TRSLQPMVHY WPLKLKDMCK SIKFATEWCN
301: NHTEKAQEIA KAGSSFVQEK LKMKFVYDYM FHLLSMYAKL LKFKPSVPPG AVEFCPETMV CPVKGLEKDY KIQSMVRSPS DTGPCTMPPP YDPAELKDVL
401: EKKDHVMKQV ETWEESGTVG GDL

Best Arabidopsis Sequence Match ( AT2G45830.1 )
(BLAST)

001: MLQRKSMKRN NNNLLTNKNK YVYLKTASHP AKSIAKATLF LVTSLFISAG LLDLLGCFDF TTFTGLKQVT TSIRKSPITS QRFPNQCGVV QNQTQLFPQN
101: GSSRNNDKPR SSHSRISTCP SYFRWIHEDL RPWKETGVTR GMLEKARRTA HFRVVILDGR VYVKKYRKSI QTRDVFTLWG IVQLLRWYPG RLPDLELMFD
201: PDDRPTVRSK DFQGQQHPAP PPLFRYCSDD ASLDIVFPDW SFWGWAEVNI KPWDKSLVAI EEGNKMTQWK DRVAYAYWRG NPNVAPTRRD LLRCNVSAQE
301: DWNTRLYIQD WDRESREGFK NSNLENQCTH RYKIYIEGWA WSVSEKYIMA CDSMTLYVRP MFYDFYVRGM MPLQHYWPIR DTSKCTSLKF AVHWGNTHLD
401: QASKIGEEGS RFIREEVKME YVYDYMFHLM NEYAKLLKFK PEIPWGATEI TPDIMGCSAT GRWRDFMEES MVMFPSEESP CEMPSPFNPH DLKEILERKT
501: NLTRQVEWWE DQYFHDLANI KKP

Arabidopsis Description

DTA2Downstream target of AGL15 2 [Source:UniProtKB/TrEMBL;Acc:F4IH50]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.