Factsheet for TraesCS2B01G093400.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, plastid, mitochondrion

Predictor Summary:

plastid 3
mitochondrion 3
golgi 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCSU01G025200.1	Wheat	plastid	92.83	82.77
Os02t0642700-01	Rice	plastid	70.92	75.11
Zm00001d051287_P001	Maize	plastid	76.1	69.33
TraesCS6B01G266000.1	Wheat	plastid	84.06	69.07
EES07545	Sorghum	plastid	75.9	69.02
GSMUA_Achr5P12260_001	Banana	mitochondrion	50.8	67.11
VIT_16s0050g00190.t01	Wine grape	nucleus	35.66	63.93
VIT_02s0025g03710.t01	Wine grape	cytosol	33.47	61.76
TraesCS2B01G386200.1	Wheat	plastid	67.53	61.3
PGSC0003DMT400000701	Potato	mitochondrion	9.16	59.74
KRH65106	Soybean	cytosol	20.52	59.54
KRH08971	Soybean	cytosol	27.29	57.32
VIT_15s0046g03110.t01	Wine grape	cytosol	42.83	57.18
VIT_15s0046g03080.t01	Wine grape	cytosol	47.21	56.03
KRH09038	Soybean	cytosol	29.68	55.19
VIT_15s0046g03050.t01	Wine grape	cytosol	46.41	55.08
VIT_16s0050g00160.t01	Wine grape	endoplasmic reticulum, golgi, vacuole	54.58	54.91
VIT_15s0046g03120.t01	Wine grape	cytosol	46.81	54.52
CDY69828	Canola	mitochondrion	41.04	53.65
KRH09051	Soybean	cytosol, nucleus, plasma membrane	28.49	52.96
Solyc03g025780.2.1	Tomato	golgi	53.39	52.86
VIT_15s0046g03140.t01	Wine grape	cytosol	24.3	52.36
VIT_15s0046g03100.t01	Wine grape	mitochondrion	13.35	52.34
KRH65107	Soybean	cytosol	15.94	52.29
KRH08981	Soybean	plastid	39.24	51.84
PGSC0003DMT400037089	Potato	endoplasmic reticulum, golgi, vacuole	52.59	51.36
Solyc03g025770.2.1	Tomato	endoplasmic reticulum, golgi, vacuole	50.0	50.4
Solyc03g025760.2.1	Tomato	endoplasmic reticulum, golgi	51.59	50.39
AT5G23850.1	Thale cress	endoplasmic reticulum, mitochondrion, peroxisome, plastid	54.38	50.37
Bra009709.1-P	Field mustard	plastid	53.39	50.19
CDX80388	Canola	plastid	53.19	49.91
KRH09010	Soybean	cytosol, peroxisome, plasma membrane	52.19	49.9
VIT_15s0046g03150.t01	Wine grape	golgi	51.59	49.9
CDX88050	Canola	plastid	52.99	49.81
KRH09011	Soybean	cytosol	52.59	49.44
KRH40487	Soybean	cytosol	34.06	49.28
Solyc01g094390.2.1	Tomato	endoplasmic reticulum, golgi, vacuole	46.02	48.94
KRH48182	Soybean	cytosol, golgi, plasma membrane	49.4	48.63
Bra018021.1-P	Field mustard	golgi	51.59	47.96
VIT_15s0046g03130.t01	Wine grape	cytosol	21.12	47.75
AT3G48980.2	Thale cress	plastid	51.79	47.71
KRH65090	Soybean	extracellular	45.22	47.69
CDX71752	Canola	cytosol	40.84	47.67
Bra007592.1-P	Field mustard	cytosol	31.67	47.46
CDY58789	Canola	endoplasmic reticulum, golgi	47.01	47.39
Bra003444.1-P	Field mustard	endoplasmic reticulum, golgi	47.01	47.39
KRH08960	Soybean	plastid	19.72	47.37
CDY05887	Canola	golgi	51.59	47.35
CDY08097	Canola	plastid	51.59	47.35
Bra007591.1-P	Field mustard	cytosol	40.44	47.21
CDY45704	Canola	endoplasmic reticulum, golgi	46.81	47.19
CDY48932	Canola	endoplasmic reticulum	46.02	47.05
KRH77521	Soybean	endoplasmic reticulum, nucleus, plasma membrane, plastid	48.8	46.93
CDX71753	Canola	endoplasmic reticulum	45.82	46.84
Bra007590.1-P	Field mustard	cytosol	45.62	46.64
VIT_15s0046g03070.t01	Wine grape	golgi	48.21	46.1
PGSC0003DMT400055754	Potato	nucleus	13.94	46.05
KRG88606	Soybean	cytosol	19.72	46.05
AT3G61270.1	Thale cress	cytosol, golgi, plasma membrane	45.42	45.78
CDY27355	Canola	golgi, mitochondrion, nucleus, plasma membrane, plastid	48.01	45.64
CDY37069	Canola	golgi	47.41	45.51
KRG88612	Soybean	cytosol	25.1	45.0
AT2G45830.1	Thale cress	mitochondrion	46.81	44.93
KRH48168	Soybean	plasma membrane	44.42	44.87
KRH08953	Soybean	cytosol, extracellular, nucleus	12.95	44.83
KRH38478	Soybean	cytosol	52.39	44.8
AT3G61290.1	Thale cress	cytosol	40.44	44.62
KRH65092	Soybean	endoplasmic reticulum, plasma membrane, vacuole	44.42	44.6
Solyc01g094380.2.1	Tomato	cytosol, extracellular, golgi, plastid	45.22	44.25
CDY18897	Canola	golgi, mitochondrion, plastid, vacuole	45.02	44.23
VIT_15s0046g03090.t01	Wine grape	cytoskeleton, golgi, nucleus	46.81	43.76
CDX89107	Canola	mitochondrion	39.24	43.01
KRH00707	Soybean	cytosol	31.27	42.9
AT1G63420.1	Thale cress	mitochondrion	48.21	41.87
VIT_15s0046g03060.t01	Wine grape	cytosol	9.76	41.18
AT2G45840.1	Thale cress	plasma membrane	42.63	40.92
Bra039310.1-P	Field mustard	golgi, mitochondrion	35.06	40.74
Bra027639.1-P	Field mustard	mitochondrion	46.81	40.66
CDY25494	Canola	mitochondrion	46.81	40.59
VIT_02s0025g03720.t01	Wine grape	endoplasmic reticulum, extracellular, plasma membrane	17.53	39.82
CDX71750	Canola	plasma membrane	41.24	39.81
TraesCS1B01G117800.1	Wheat	mitochondrion	38.45	39.79
CDY48930	Canola	plasma membrane	41.83	39.62
Bra007593.1-P	Field mustard	endoplasmic reticulum, nucleus, plasma membrane	41.63	39.43
CDX71749	Canola	cytosol, golgi, plasma membrane	34.06	39.4
AT3G61280.1	Thale cress	plasma membrane	41.83	39.18
CDY18896	Canola	golgi, plasma membrane, plastid	30.68	39.09
TraesCS7B01G317100.1	Wheat	endoplasmic reticulum	41.83	38.75
TraesCS7B01G229100.2	Wheat	cytosol, endoplasmic reticulum, plastid	43.82	37.8
Solyc05g048800.1.1	Tomato	cytosol	17.73	36.63
KRG88496	Soybean	cytosol	12.35	35.43
CDY48931	Canola	plasma membrane	22.71	34.76
Bra004942.1-P	Field mustard	mitochondrion, peroxisome, plasma membrane, plastid	43.03	33.86
CDX74769	Canola	mitochondrion, peroxisome, plasma membrane, plastid	42.83	33.7
KRH09043	Soybean	cytosol, golgi, mitochondrion, plastid	12.15	33.52
PGSC0003DMT400000098	Potato	cytosol	47.41	27.45
CDY42493	Canola	cytosol	38.84	22.54

Protein Annotations

EnsemblPlants:TraesCS2B01G093400.1	EnsemblPlantsGene:TraesCS2B01G093400	InterPro:LipoPS_modifying	ncoils:Coil	PANTHER:PTHR12203	PANTHER:PTHR12203:SF33
PFAM:PF05686	SEG:seg	SMART:SM00672	TMHMM:TMhelix	MapMan:35.2	:

Description

No Description!

Coordinates

chr2B:-:53698859..53702135

Molecular Weight (calculated)

57651.7 Da

IEP (calculated)

8.891

GRAVY (calculated)

-0.474

Length

502 amino acids

Sequence
(BLAST)

001: MAAAAPDARR WSRSGGPSSP VTATAVFLFV FVVVVGVLVS GRWITTTALV TLTSQATSLR LCPSHSPQTQ HAPLSPRHSW FPPTAAANTS CPAYFRFIHE
101: DLHPWRTAGG ITRTMLDRAR TTANFRLVVL HGRAYIERIA PAFQTRDLFT IWGILQLLRR YPGRIPDLDL MFDCVDWPVV HPDEYQGENA TVLPPLFRYC
201: GDNETLDIVF PDWSFWGWAE INIKPWDALQ KDLDAGNRKV RWIDREPYAY WKGNPEVAAI RQELVKCNVS SEQEWNARIY KQDWVKESKA GYKKSDLASQ
301: CTHRYKIYIE GSAWSVSKKY ILACDSMTLV INPKYYDFFS RVLMPTQHYW PVRDDSKCNS IKYAVDWGNS HKKKAQKIGK EGSKFIQQEL SMEYVYDYMF
401: HLLTEYAKLL RFKPTKPPEA VEVCPESLAC QAVGREKKFM EDSMVKSANV AGPCNLPPPF SPEEFRELHQ RKEKSMNQVE MLERNASKPE ERNSSKPEGS
501: NR

Best Arabidopsis Sequence Match ( AT5G23850.1 )
(BLAST)

001: MRNSPSKNGS AGGHSRTYTD TIWSPFVKSG LGISPNRSYA LVSLLILLIV GAFISTRLLL DTTVLLEKKA ATTTTTKTQT QTITPKYPRP TTVITQSPKP
101: EFTLHCSANE TTASCPSNKY PTTTSFEDDD TNHPPTATCP DYFRWIHEDL RPWSRTGITR EALERAKKTA TFRLAIVGGK IYVEKFQDAF QTRDVFTIWG
201: FLQLLRKYPG KIPDLELMFD CVDWPVVRAT EFAGANAPSP PPLFRYCGNE ETLDIVFPDW SFWGWAEVNI KPWESLLKEL REGNERTKWI NREPYAYWKG
301: NPMVAETRQD LMKCNVSEEH EWNARLYAQD WIKESKEGYK QSDLASQCHH RYKIYIEGSA WSVSEKYILA CDSVTLLVKP HYYDFFTRGL LPAHHYWPVR
401: EHDKCRSIKF AVDWGNSHIQ KAQDIGKAAS DFIQQDLKMD YVYDYMYHLL TEYSKLLQFK PEIPRNAVEI CSETMACLRS GNERKFMTES LVKQPADSGP
501: CAMPPPYDPA TYYEVVKRKQ STNMRILQWE MKYWSKQNQT GS

Arabidopsis Description

At5g23850 [Source:UniProtKB/TrEMBL;Acc:Q9FF95]
SUBAcon: [plastid,endoplasmic reticulum,peroxisome,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.