CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, plasma membrane, golgi, nucleus

Predictor Summary:

plastid 2
plasma membrane 1
mitochondrion 2
nucleus 1
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY37069	Canola	golgi	94.32	95.22
AT2G45830.1	Thale cress	mitochondrion	81.44	82.22
CDY18897	Canola	golgi, mitochondrion, plastid, vacuole	78.79	81.41
CDY69828	Canola	mitochondrion	55.11	75.78
CDY58789	Canola	endoplasmic reticulum, golgi	67.8	71.89
CDY48932	Canola	endoplasmic reticulum	66.29	71.28
CDX71753	Canola	endoplasmic reticulum	66.29	71.28
CDY45704	Canola	endoplasmic reticulum, golgi	66.86	70.88
VIT_15s0046g03110.t01	Wine grape	cytosol	45.83	64.36
KRH65106	Soybean	cytosol	20.45	62.43
GSMUA_Achr5P12260_001	Banana	mitochondrion	42.99	59.74
CDX74769	Canola	mitochondrion, peroxisome, plasma membrane, plastid	69.89	57.84
VIT_15s0046g03150.t01	Wine grape	golgi	56.06	57.03
KRH65107	Soybean	cytosol	16.29	56.21
KRH48182	Soybean	cytosol, golgi, plasma membrane	52.65	54.51
CDX71752	Canola	cytosol	43.94	53.95
Solyc01g094380.2.1	Tomato	cytosol, extracellular, golgi, plastid	51.33	52.83
PGSC0003DMT400055754	Potato	nucleus	14.77	51.32
Os02t0642700-01	Rice	plastid	43.94	48.95
CDX71749	Canola	cytosol, golgi, plasma membrane	39.96	48.62
TraesCS2B01G093400.1	Wheat	golgi, mitochondrion, plastid	45.64	48.01
HORVU6Hr1G060750.4	Barley	cytosol, peroxisome	44.89	47.69
CDX89107	Canola	mitochondrion	41.29	47.6
CDY48930	Canola	plasma membrane	47.35	47.17
CDX88050	Canola	plastid	46.97	46.44
CDY18896	Canola	golgi, plasma membrane, plastid	34.47	46.19
CDX71750	Canola	plasma membrane	45.45	46.15
CDX80388	Canola	plastid	46.4	45.79
CDY08097	Canola	plastid	46.78	45.16
Solyc05g048800.1.1	Tomato	cytosol	20.64	44.86
CDY05887	Canola	golgi	46.4	44.79
TraesCS2A01G368900.2	Wheat	plastid	46.59	44.32
TraesCS6A01G237500.1	Wheat	cytosol, mitochondrion	38.83	43.71
TraesCS2D01G365600.1	Wheat	plastid	45.64	43.42
TraesCS2B01G386200.1	Wheat	plastid	45.45	43.4
Zm00001d002836_P006	Maize	plastid	44.13	43.07
TraesCS6D01G220200.2	Wheat	cytosol, mitochondrion	39.02	43.01
TraesCSU01G025200.1	Wheat	plastid	45.83	42.98
EES11181	Sorghum	plastid	44.89	42.7
Os04t0534100-01	Rice	mitochondrion	35.42	42.69
CDY48931	Canola	plasma membrane	26.52	42.68
Zm00001d051287_P001	Maize	plastid	44.13	42.29
EES07545	Sorghum	plastid	44.13	42.21
CDY25494	Canola	mitochondrion	44.51	40.59
CDY06688	Canola	mitochondrion	37.12	38.89
TraesCS6B01G266000.1	Wheat	plastid	44.89	38.79
CDY10259	Canola	mitochondrion	36.93	38.77
CDY09932	Canola	endoplasmic reticulum, golgi	36.36	38.1
CDY59071	Canola	endoplasmic reticulum, golgi, vacuole	36.55	37.99
CDY42493	Canola	cytosol	40.53	24.74

Protein Annotations

EnsemblPlants:CDY27355	EnsemblPlantsGene:GSBRNA2T00037292001	GO:A0A078GL87	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:LipoPS_modifying	PANTHER:PTHR12203	PANTHER:PTHR12203:SF28	PFAM:PF05686	ProteinID:CDY27355	ProteinID:CDY27355.1
SEG:seg	SMART:SM00672	TMHMM:TMhelix	UniParc:UPI0004EE7470	UniProt:A0A078GL87	MapMan:35.2

Description

BnaC04g50500DBnaC04g50500D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GL87]

Coordinates

chrLK032203:-:225636..227836

Molecular Weight (calculated)

62006.6 Da

IEP (calculated)

8.977

GRAVY (calculated)

-0.726

Length

528 amino acids

Sequence
(BLAST)

001: MLQRKSMKRN NNSDAHTNRH ASLKTTSYPG KRIAKATLFF VSCLFISAGL LDLLGCFDLT TFTGLKQVTT IKKQPITTHH KFPDQCDVVR NQTQQQERQQ
101: LPMSEDGTEN DKTGSSHSRP STCPSYFRWI HEDLRPWRET GITRGMLEKA RSNKAHFRVI ILDGKVYVKK YRKSIDTRDV FTLWGILQLL RWYPGRLPDL
201: ELMFDANDRP TVRSNDYRGQ QHPAPPPIFR YCSDDASLDI VFPDWSFWGW AEVNIKPWAK SVVAIQEGNK MTPWKDRVAY AYWRGNPNVA PTRRDLLTCN
301: VSDQQDWNTR LYINDWVRES REGFKNSNLE NQCTHRYKIY IEGWAWSVSE KYIMACDSMT LYVRPKYYDF FIRGMMPLQH YWPIRDNSKC TSLKHAVHWG
401: NTHLDQARKI GEEGSRYIRE EVNMEHVYDY MFHLMNEYAK LQKFKPEIPW GATEITPDSM GCPATGRWRD FMEESMVMSP SEASPCEMPL PYSPAEFREV
501: LERKANVTRQ VGLWEDQYFS NLRNGNKP

Best Arabidopsis Sequence Match ( AT2G45830.1 )
(BLAST)

001: MLQRKSMKRN NNNLLTNKNK YVYLKTASHP AKSIAKATLF LVTSLFISAG LLDLLGCFDF TTFTGLKQVT TSIRKSPITS QRFPNQCGVV QNQTQLFPQN
101: GSSRNNDKPR SSHSRISTCP SYFRWIHEDL RPWKETGVTR GMLEKARRTA HFRVVILDGR VYVKKYRKSI QTRDVFTLWG IVQLLRWYPG RLPDLELMFD
201: PDDRPTVRSK DFQGQQHPAP PPLFRYCSDD ASLDIVFPDW SFWGWAEVNI KPWDKSLVAI EEGNKMTQWK DRVAYAYWRG NPNVAPTRRD LLRCNVSAQE
301: DWNTRLYIQD WDRESREGFK NSNLENQCTH RYKIYIEGWA WSVSEKYIMA CDSMTLYVRP MFYDFYVRGM MPLQHYWPIR DTSKCTSLKF AVHWGNTHLD
401: QASKIGEEGS RFIREEVKME YVYDYMFHLM NEYAKLLKFK PEIPWGATEI TPDIMGCSAT GRWRDFMEES MVMFPSEESP CEMPSPFNPH DLKEILERKT
501: NLTRQVEWWE DQYFHDLANI KKP

Arabidopsis Description

DTA2Downstream target of AGL15 2 [Source:UniProtKB/TrEMBL;Acc:F4IH50]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.