CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 3
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX89107	Canola	mitochondrion	50.4	95.2
CDX71752	Canola	cytosol	40.0	80.47
AT3G61290.1	Thale cress	cytosol	41.62	79.12
CDX71750	Canola	plasma membrane	39.31	65.38
CDY48930	Canola	plasma membrane	39.31	64.15
VIT_15s0046g03100.t01	Wine grape	mitochondrion	8.9	60.16
CDX71749	Canola	cytosol, golgi, plasma membrane	29.71	59.22
CDY48931	Canola	plasma membrane	20.92	55.18
VIT_15s0046g03140.t01	Wine grape	cytosol	14.57	54.08
GSMUA_Achr5P12260_001	Banana	mitochondrion	21.62	49.21
KRH40487	Soybean	cytosol	19.65	48.99
CDY69828	Canola	mitochondrion	21.5	48.44
CDY18896	Canola	golgi, plasma membrane, plastid	21.97	48.22
VIT_15s0046g03130.t01	Wine grape	cytosol	11.68	45.5
KRH00707	Soybean	cytosol	19.19	45.36
KRH65090	Soybean	extracellular	24.39	44.33
CDX71753	Canola	endoplasmic reticulum	24.51	43.18
CDY48932	Canola	endoplasmic reticulum	24.51	43.18
CDY45704	Canola	endoplasmic reticulum, golgi	24.74	42.97
CDY58789	Canola	endoplasmic reticulum, golgi	24.51	42.57
KRH48168	Soybean	plasma membrane	24.39	42.45
KRH65092	Soybean	endoplasmic reticulum, plasma membrane, vacuole	24.16	41.8
Os02t0642700-01	Rice	plastid	22.89	41.77
CDX88050	Canola	plastid	25.43	41.2
CDX80388	Canola	plastid	25.09	40.56
CDY37069	Canola	golgi	24.51	40.54
CDY27355	Canola	golgi, mitochondrion, nucleus, plasma membrane, plastid	24.74	40.53
CDY08097	Canola	plastid	25.55	40.4
CDY05887	Canola	golgi	25.55	40.4
CDY18897	Canola	golgi, mitochondrion, plastid, vacuole	23.7	40.12
HORVU6Hr1G060750.4	Barley	cytosol, peroxisome	22.89	39.84
TraesCS2B01G093400.1	Wheat	golgi, mitochondrion, plastid	22.54	38.84
TraesCS6A01G237500.1	Wheat	cytosol, mitochondrion	20.69	38.17
TraesCS6D01G220200.2	Wheat	cytosol, mitochondrion	21.04	38.0
Zm00001d051287_P001	Maize	plastid	23.47	36.84
EES07545	Sorghum	plastid	23.47	36.78
CDX74769	Canola	mitochondrion, peroxisome, plasma membrane, plastid	27.05	36.68
Zm00001d002836_P006	Maize	plastid	22.77	36.41
Os04t0534100-01	Rice	mitochondrion	18.27	36.07
EES11181	Sorghum	plastid	23.01	35.86
CDY10259	Canola	mitochondrion	20.81	35.79
CDY06688	Canola	mitochondrion	20.58	35.32
CDY25494	Canola	mitochondrion	23.58	35.23
TraesCSU01G025200.1	Wheat	plastid	22.89	35.17
CDY09932	Canola	endoplasmic reticulum, golgi	20.35	34.92
TraesCS2B01G386200.1	Wheat	plastid	22.31	34.9
CDY59071	Canola	endoplasmic reticulum, golgi, vacuole	20.35	34.65
TraesCS2A01G368900.2	Wheat	plastid	22.2	34.59
TraesCS2D01G365600.1	Wheat	plastid	21.97	34.23
TraesCS6B01G266000.1	Wheat	plastid	23.12	32.73

Protein Annotations

EnsemblPlants:CDY42493	EnsemblPlantsGene:GSBRNA2T00074930001	Gene3D:2.60.40.150	InterPro:C2_dom	InterPro:C2_domain_sf	InterPro:IPR000008
InterPro:IPR035892	InterPro:LipoPS_modifying	PANTHER:PTHR12203	PANTHER:PTHR12203:SF28	PFAM:PF00168	PFAM:PF05686
PFscan:PS50004	ProteinID:CDY42493	ProteinID:CDY42493.1	SEG:seg	SMART:SM00239	SMART:SM00672
SUPFAM:SSF49562	UniParc:UPI0004EE0B6E	UniProt:A0A078I0A6	MapMan:35.1	:	:

Description

BnaC04g21880DBnaC04g21880D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I0A6]

Coordinates

chrLK032526:+:183048..186881

Molecular Weight (calculated)

99843.6 Da

IEP (calculated)

7.654

GRAVY (calculated)

-0.556

Length

865 amino acids

Sequence
(BLAST)

001: MVATSVVAST KKTIKIPLNC KDTTQKCPLN YPSRFKPAIS SSETCPDYFK WIHQDLKVWQ ETGITRETLE RAKPNAHFRL VIKSGRLYLH QYDKCYQTRD
101: VFTIWGILQL LKMYPGQVPD LELLFLCHDQ PGIWKKDFRR EGPNSTWPPP PLFHYCSHRD AYDIVFPDWS FWGWPEVNVK EWTTLQVAIR EANERVRWKD
201: RVPYAHWKGN SYVSPERRNL MQCNFSDKYD PMVHLYEQDW EKERENGFKS SNLEDQCTHR YKIYIEGRAW SVSKKYILAC DSMALLVKPE FFDFFGRSMV
301: PMEHYWPIRP QESCRDLEFA VEWGNNNTEK AQEIGRRGSE YMMKRLEMKY VYDYMLYVLQ GYGKLMRLNV TVPENATEVC SETMACPITD GGLIRQCMDD
401: SLVTYPSVKA ACDLPQPYGD DEIKRFLKSQ ESAERHVEKL TNDYWEVISA RLGDGVNSFV ELRFDDQKVK TSTKLDDTSP VWNERFSFNI SDTEDLSNLV
501: LEAYVYNKTS NGTRSCLGKI RILGTAFVPY SEAVGLHYPL EKEKWSVFSF GSTVRGELTL KVFVTDNPSV KIPTPNPIKK LASNTSHNLH NIPASEKTKP
601: RLRKTQQPPQ LQTLSPQPPQ PQTLFSQPQT LSPQPHQPHT LSPQQQMSSP QPYGSPVLGG GVRARTTTTA HDLVEPMEYL FVKIVKACNL PTMDPTGSLD
701: PYIEVKQGNF TATTTQFEKN KNPVWNEVFA FTKSDQQANF VDVIVMDKGV MKDNFVGSIR FDLNEIPTRV ATDSPIAPEW YIVNHERGGE IMLSVWFGTQ
801: ADEAFSDATY SDALNVVNKS SVRSKVYHSP RLWYLRVNVI EAQDLVIVPD RTRFSTKSVR EYQVR

Best Arabidopsis Sequence Match ( AT3G61290.1 )
(BLAST)

001: MMTTSILTTT NTIIKIPLKC NATQTCPSTY PSRLEPMISS LETCPDYFRW IQQDLKVWEE TGITRETLER AKPKAHFRLV IKSGRLYVHQ YDKAYESRDV
101: LTIWGILQLL RMYPGQVPDL ELLFFCHDIP AIWKRDFRQP EPNATWPPPP LFQYCGHREA YGIVFPDWSF WGWPEVNIKE WTKLSVAIRE ANKRVKWNDR
201: VPYAYWKGNS GVHRERGNLM KCNFSDKYDP MVRLYEQDWG KEREIGFKSS NLEDQCTHRY KIYIEGRAWS VSKKYILACD SMTLLIKAEY FDFFGRSLVP
301: LEHYWPIKSH EKCGDLKFAV EWGNNNTKKA QVIGRQGSDY IMKNLEMKYV YDYMLYVLQG YGKLMKLDVT VPENATEVCS ETMACPITDG GLIRQCMDDS
401: LVMSPSVKSA CDLPRPYRDD ELKRFLEKQE SAERKVEKWT NEYWEAQNKT FQQRK

Arabidopsis Description

Glycosyltransferase [Source:UniProtKB/TrEMBL;Acc:Q9M2D5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.