CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX71753	Canola	endoplasmic reticulum	96.61	75.56
CDY48932	Canola	endoplasmic reticulum	95.31	74.54
CDY58789	Canola	endoplasmic reticulum, golgi	87.24	67.27
CDY45704	Canola	endoplasmic reticulum, golgi	86.72	66.87
AT3G61270.1	Thale cress	cytosol, golgi, plasma membrane	86.2	66.47
KRH65106	Soybean	cytosol	28.91	64.16
VIT_15s0046g03110.t01	Wine grape	cytosol	61.46	62.77
GSMUA_Achr5P12260_001	Banana	mitochondrion	58.33	58.95
KRH65107	Soybean	cytosol	22.92	57.52
CDY18897	Canola	golgi, mitochondrion, plastid, vacuole	73.96	55.58
CDY37069	Canola	golgi	75.52	55.45
CDY27355	Canola	golgi, mitochondrion, nucleus, plasma membrane, plastid	75.78	55.11
PGSC0003DMT400055754	Potato	nucleus	20.05	50.66
KRH48182	Soybean	cytosol, golgi, plasma membrane	64.84	48.82
VIT_15s0046g03150.t01	Wine grape	golgi	64.58	47.78
CDX71752	Canola	cytosol	52.86	47.21
Os02t0642700-01	Rice	plastid	54.43	44.09
Solyc01g094380.2.1	Tomato	cytosol, extracellular, golgi, plastid	58.33	43.66
TraesCS6A01G237500.1	Wheat	cytosol, mitochondrion	53.12	43.5
TraesCS6D01G220200.2	Wheat	cytosol, mitochondrion	53.12	42.59
CDX89107	Canola	mitochondrion	49.22	41.27
HORVU6Hr1G060750.4	Barley	cytosol, peroxisome	53.39	41.25
TraesCS2B01G093400.1	Wheat	golgi, mitochondrion, plastid	53.65	41.04
CDX88050	Canola	plastid	54.43	39.14
CDX80388	Canola	plastid	53.91	38.69
CDX74769	Canola	mitochondrion, peroxisome, plasma membrane, plastid	64.06	38.56
CDY48930	Canola	plasma membrane	53.12	38.49
CDX71749	Canola	cytosol, golgi, plasma membrane	43.49	38.48
Zm00001d002836_P006	Maize	plastid	53.91	38.26
EES11181	Sorghum	plastid	54.69	37.84
CDX71750	Canola	plasma membrane	51.04	37.69
CDY08097	Canola	plastid	53.65	37.66
EES07545	Sorghum	plastid	53.65	37.32
TraesCS2D01G365600.1	Wheat	plastid	53.91	37.3
TraesCS2A01G368900.2	Wheat	plastid	53.91	37.3
CDY05887	Canola	golgi	53.12	37.29
TraesCS2B01G386200.1	Wheat	plastid	53.65	37.25
Zm00001d051287_P001	Maize	plastid	53.39	37.21
TraesCSU01G025200.1	Wheat	plastid	53.39	36.41
CDY25494	Canola	mitochondrion	54.17	35.92
Os04t0534100-01	Rice	mitochondrion	40.62	35.62
CDY09932	Canola	endoplasmic reticulum, golgi	45.31	34.52
CDY06688	Canola	mitochondrion	45.05	34.33
Solyc05g048800.1.1	Tomato	cytosol	21.61	34.16
CDY59071	Canola	endoplasmic reticulum, golgi, vacuole	45.05	34.06
CDY10259	Canola	mitochondrion	44.53	34.0
TraesCS6B01G266000.1	Wheat	plastid	53.12	33.39
CDY18896	Canola	golgi, plasma membrane, plastid	33.33	32.49
CDY48931	Canola	plasma membrane	24.22	28.35
CDY42493	Canola	cytosol	48.44	21.5

Protein Annotations

EnsemblPlants:CDY69828	EnsemblPlantsGene:GSBRNA2T00092810001	InterPro:LipoPS_modifying	ncoils:Coil	PANTHER:PTHR12203	PANTHER:PTHR12203:SF28
PFAM:PF05686	ProteinID:CDY69828	ProteinID:CDY69828.1	SMART:SM00672	UniParc:UPI0004EE2A1C	UniProt:A0A078JQI4
MapMan:35.2	:	:	:	:	:

Description

BnaCnng65570DBnaCnng65570D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JQI4]

Coordinates

chrLK040449:-:1947..3437

Molecular Weight (calculated)

45628.3 Da

IEP (calculated)

6.081

GRAVY (calculated)

-0.667

Length

384 amino acids

Sequence
(BLAST)

001: MVEKAGRTAH FRLVIHSGKA YVKRYKKSIQ TRADFNLWGI LQLLRWYPGR LPDLELMFDA DDRPIVRSDD FKGQNMDPPP LFRYCSDDAS LDIVFPDWSF
101: WGWAEINIEP WGKSLEAIKK GNNITQWKDR VAYAYWKGNP DVDPGRKDLL KCNVSEHEDW NMKTLYSEMV NKDWDKESKE GFKNSNLENQ CTHRYKIYIE
201: GWAWSVSEKY IMACDSMTVY VKPRFYDFYI RGMMPLQHYW PIRDDSKCTS LKFAVHWGNT HVDKAREIGE VGSRFIREEV NMKYVYDYMF HLLNEYAKLL
301: KFKPEIPLDA EEITPDNMGC PATERWRDFM AESMVMSPSE ELPCEMLPPY DRLALKEVLE KKANLTRQVE LWEDQYFHDL TNKP

Best Arabidopsis Sequence Match ( AT3G61270.2 )
(BLAST)

001: MIEEASRTAH FRLVIRNGKA YVKRYKKSIQ TRDEFTLWGI LQLLRWYPGK LPDLELMFDA DDRPVVRSVD FIGQQKEPPP VFRYCSDDAS LDIVFPDWSF
101: WGWAEVNVKP WGKSLEAIKE GNSMTQWKDR VAYAYWRGNP YVDPGRGDLL KCNATEHEEW NTRLYIQDWD KETKEGFKNS NLENQCTHRY KIYIEGWAWS
201: VSEKYIMACD SMTLYVKPRF YDFYIRGMMP LQHYWPIRDD SKCTSLKFAV HWGNTHEDKA REIGEVGSRF IREEVNMQYV YDYMFHLLKE YATLLKFKPE
301: IPLDAEEITP DSMGCPATER WRDFKAESMI ISPSEESPCE MLPPYDPLAL KEVLERKANL TRQVELWENQ YFQNLTNKP

Arabidopsis Description

Glycosyltransferase [Source:UniProtKB/TrEMBL;Acc:Q9M2D7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.