CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: golgi, plastid, vacuole, mitochondrion

Predictor Summary:

plastid 2
mitochondrion 3
golgi 1
vacuole 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY37069	Canola	golgi	81.41	79.54
CDY27355	Canola	golgi, mitochondrion, nucleus, plasma membrane, plastid	81.41	78.79
AT2G45830.1	Thale cress	mitochondrion	80.23	78.39
CDY69828	Canola	mitochondrion	55.58	73.96
CDX71753	Canola	endoplasmic reticulum	67.91	70.67
CDY48932	Canola	endoplasmic reticulum	67.71	70.47
CDY58789	Canola	endoplasmic reticulum, golgi	67.51	69.28
CDY45704	Canola	endoplasmic reticulum, golgi	66.73	68.47
CDX74769	Canola	mitochondrion, peroxisome, plasma membrane, plastid	80.63	64.58
VIT_15s0046g03110.t01	Wine grape	cytosol	46.18	62.77
KRH65106	Soybean	cytosol	20.16	59.54
GSMUA_Achr5P12260_001	Banana	mitochondrion	43.44	58.42
KRH65107	Soybean	cytosol	16.63	55.56
VIT_15s0046g03150.t01	Wine grape	golgi	55.58	54.72
KRH48182	Soybean	cytosol, golgi, plasma membrane	52.45	52.55
CDX71752	Canola	cytosol	43.64	51.86
Solyc01g094380.2.1	Tomato	cytosol, extracellular, golgi, plastid	50.88	50.68
PGSC0003DMT400055754	Potato	nucleus	14.68	49.34
Os02t0642700-01	Rice	plastid	43.84	47.26
CDY18896	Canola	golgi, plasma membrane, plastid	36.2	46.95
CDX71749	Canola	cytosol, golgi, plasma membrane	39.33	46.31
CDX89107	Canola	mitochondrion	41.1	45.85
CDX88050	Canola	plastid	47.75	45.69
CDX71750	Canola	plasma membrane	46.38	45.58
CDY48930	Canola	plasma membrane	46.97	45.28
HORVU6Hr1G060750.4	Barley	cytosol, peroxisome	44.03	45.27
CDX80388	Canola	plastid	47.16	45.05
TraesCS2B01G093400.1	Wheat	golgi, mitochondrion, plastid	44.23	45.02
CDY08097	Canola	plastid	47.36	44.24
CDY05887	Canola	golgi	46.97	43.88
Solyc05g048800.1.1	Tomato	cytosol	20.74	43.62
TraesCS6A01G237500.1	Wheat	cytosol, mitochondrion	38.94	42.43
TraesCS2D01G365600.1	Wheat	plastid	45.79	42.16
TraesCS2A01G368900.2	Wheat	plastid	45.79	42.16
TraesCS2B01G386200.1	Wheat	plastid	45.6	42.13
EES07545	Sorghum	plastid	45.21	41.85
TraesCS6D01G220200.2	Wheat	cytosol, mitochondrion	39.14	41.75
Zm00001d002836_P006	Maize	plastid	44.03	41.59
Zm00001d051287_P001	Maize	plastid	44.81	41.56
CDY48931	Canola	plasma membrane	26.61	41.46
EES11181	Sorghum	plastid	44.81	41.26
TraesCSU01G025200.1	Wheat	plastid	44.81	40.67
Os04t0534100-01	Rice	mitochondrion	34.64	40.41
CDY25494	Canola	mitochondrion	45.01	39.72
CDY06688	Canola	mitochondrion	36.99	37.5
CDY09932	Canola	endoplasmic reticulum, golgi	36.99	37.5
CDY59071	Canola	endoplasmic reticulum, golgi, vacuole	37.18	37.4
CDY10259	Canola	mitochondrion	36.79	37.38
TraesCS6B01G266000.1	Wheat	plastid	44.62	37.32
CDY42493	Canola	cytosol	40.12	23.7

Protein Annotations

EnsemblPlants:CDY18897	EnsemblPlantsGene:GSBRNA2T00006087001	GO:A0A078G1N9	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:LipoPS_modifying	ncoils:Coil	PANTHER:PTHR12203	PANTHER:PTHR12203:SF28	PFAM:PF05686	ProteinID:CDY18897
ProteinID:CDY18897.1	SEG:seg	SMART:SM00672	TMHMM:TMhelix	UniParc:UPI0004EDB449	UniProt:A0A078G1N9
MapMan:35.2	:	:	:	:	:

Description

BnaC04g04530DBnaC04g04530D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G1N9]

Coordinates

chrLK032090:-:178681..180621

Molecular Weight (calculated)

60389.4 Da

IEP (calculated)

9.581

GRAVY (calculated)

-0.573

Length

511 amino acids

Sequence
(BLAST)

001: MVQRKSTKRN NSDTQTNHVF IKTVSYQGKR IAKATLLLVF SIFISSGLLR FLGCFDFTTL AGLKQVTTTI IKPPIKTLHR FPRQCGVVQN QTQPVFELRN
101: SHSRPSTCPS YFRWIHEDLR PWRETGVTRG MLEKARRKAH FRVIIIDGRV YVKKYRRAIE TRDTFTLWGI VQLLQWYPGR LPDLELLFDA DDRPTVRSSD
201: YRGQQHPAPP PVFRYCSNDA NLDIVFPDWS FWGWAELNIK PWAKSLVAIE EGNKMTQWED RVPYAYWRGN PNVARTRRDL LRCNVSDQGD WNTRLYINDW
301: ATEFKEGFKN SNLENQYTHR YKIYIEGWAW SVSEKYIMAC DSMTLYVRPT YYDFLIRGMV PLQHYWPIRD LGKCRSLKHA VHWGNTHLDQ ARKIGEEGSR
401: YIREEVNMEY VYDYMFHLMN EYAKLLKFKP EIPLGAKEIT TDSMGCPAKG RWRDFMAESM VMSPSEVSPC EMPLPYSTLE LKEVLERKAN LTRQVEVWED
501: QYYRNLTNAK H

Best Arabidopsis Sequence Match ( AT2G45830.1 )
(BLAST)

001: MLQRKSMKRN NNNLLTNKNK YVYLKTASHP AKSIAKATLF LVTSLFISAG LLDLLGCFDF TTFTGLKQVT TSIRKSPITS QRFPNQCGVV QNQTQLFPQN
101: GSSRNNDKPR SSHSRISTCP SYFRWIHEDL RPWKETGVTR GMLEKARRTA HFRVVILDGR VYVKKYRKSI QTRDVFTLWG IVQLLRWYPG RLPDLELMFD
201: PDDRPTVRSK DFQGQQHPAP PPLFRYCSDD ASLDIVFPDW SFWGWAEVNI KPWDKSLVAI EEGNKMTQWK DRVAYAYWRG NPNVAPTRRD LLRCNVSAQE
301: DWNTRLYIQD WDRESREGFK NSNLENQCTH RYKIYIEGWA WSVSEKYIMA CDSMTLYVRP MFYDFYVRGM MPLQHYWPIR DTSKCTSLKF AVHWGNTHLD
401: QASKIGEEGS RFIREEVKME YVYDYMFHLM NEYAKLLKFK PEIPWGATEI TPDIMGCSAT GRWRDFMEES MVMFPSEESP CEMPSPFNPH DLKEILERKT
501: NLTRQVEWWE DQYFHDLANI KKP

Arabidopsis Description

DTA2Downstream target of AGL15 2 [Source:UniProtKB/TrEMBL;Acc:F4IH50]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.