Factsheet for Bra009709.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
endoplasmic reticulum 1
peroxisome 2
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX88050	Canola	plastid	98.69	98.69
CDX80388	Canola	plastid	97.75	97.57
AT5G23850.1	Thale cress	endoplasmic reticulum, mitochondrion, peroxisome, plastid	86.89	85.61
Bra018021.1-P	Field mustard	golgi	74.53	73.7
VIT_16s0050g00190.t01	Wine grape	nucleus	35.96	68.57
GSMUA_Achr5P12260_001	Banana	mitochondrion	46.82	65.79
KRH08971	Soybean	cytosol	28.84	64.44
VIT_16s0050g00160.t01	Wine grape	endoplasmic reticulum, golgi, vacuole	58.8	62.93
KRH09038	Soybean	cytosol	31.09	61.48
KRH09011	Soybean	cytosol	60.3	60.3
KRH08981	Soybean	plastid	42.7	60.0
KRH09010	Soybean	cytosol, peroxisome, plasma membrane	57.87	58.86
Os02t0642700-01	Rice	plastid	51.12	57.59
KRH08960	Soybean	plastid	22.47	57.42
KRH09051	Soybean	cytosol, nucleus, plasma membrane	28.84	57.04
PGSC0003DMT400037089	Potato	endoplasmic reticulum, golgi, vacuole	53.93	56.03
Solyc03g025760.2.1	Tomato	endoplasmic reticulum, golgi	53.75	55.84
KRH38478	Soybean	cytosol	60.3	54.86
KRH08953	Soybean	cytosol, extracellular, nucleus	14.61	53.79
HORVU6Hr1G060750.4	Barley	cytosol, peroxisome	50.0	53.72
Solyc03g025770.2.1	Tomato	endoplasmic reticulum, golgi, vacuole	50.0	53.61
TraesCS2B01G093400.1	Wheat	golgi, mitochondrion, plastid	50.19	53.39
KRG88606	Soybean	cytosol	20.97	52.09
Bra007592.1-P	Field mustard	cytosol	32.4	51.64
Bra007591.1-P	Field mustard	cytosol	41.39	51.4
Zm00001d051287_P001	Maize	plastid	52.62	51.0
TraesCS6A01G237500.1	Wheat	cytosol, mitochondrion	44.76	50.96
EES07545	Sorghum	plastid	52.43	50.72
Zm00001d002836_P006	Maize	plastid	50.94	50.28
TraesCS6D01G220200.2	Wheat	cytosol, mitochondrion	44.94	50.1
Bra003444.1-P	Field mustard	endoplasmic reticulum, golgi	46.63	50.0
EES11181	Sorghum	plastid	51.87	49.91
Bra007590.1-P	Field mustard	cytosol	45.51	49.49
KRG88612	Soybean	cytosol	25.66	48.93
TraesCSU01G025200.1	Wheat	plastid	51.5	48.85
Os04t0534100-01	Rice	mitochondrion	39.89	48.63
TraesCS2D01G365600.1	Wheat	plastid	50.19	48.29
TraesCS2B01G386200.1	Wheat	plastid	49.81	48.1
TraesCS2A01G368900.2	Wheat	plastid	49.81	47.93
TraesCS6B01G266000.1	Wheat	plastid	51.87	45.34
Bra007593.1-P	Field mustard	endoplasmic reticulum, nucleus, plasma membrane	44.19	44.53
Bra027639.1-P	Field mustard	mitochondrion	46.25	42.73
Bra039310.1-P	Field mustard	golgi, mitochondrion	34.46	42.59
Bra031558.1-P	Field mustard	endoplasmic reticulum, golgi, mitochondrion	38.39	40.59
Bra015563.1-P	Field mustard	mitochondrion	37.45	39.68
KRG88496	Soybean	cytosol	12.36	37.71
KRH09043	Soybean	cytosol, golgi, mitochondrion, plastid	12.73	37.36
Bra004942.1-P	Field mustard	mitochondrion, peroxisome, plasma membrane, plastid	44.19	36.99

Protein Annotations

EnsemblPlants:Bra009709.1	EnsemblPlants:Bra009709.1-P	EnsemblPlantsGene:Bra009709	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005768	GO:GO:0005794	GO:GO:0005802	GO:GO:0016020	GO:GO:0016021
InterPro:LipoPS_modifying	PANTHER:PTHR12203	PANTHER:PTHR12203:SF59	PFAM:PF05686	SEG:seg	SMART:SM00672
TMHMM:TMhelix	UniParc:UPI000253F106	UniProt:M4CZR2	MapMan:35.2	:	:

Description

AT5G23850 (E=2e-283) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipopolysaccharide-modifying protein (InterPro:IPR006598), Protein of unknown function DUF821, CAP10-like (InterPro:IPR008539); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G48980.1); Has 588 Blast hits to 567 proteins in 103 species: Archae - 2; Bacteria - 34; Metazoa - 301; Fungi - 69; Plants - 115; Viruses - 3; Other Eukaryotes - 64 (source: NCBI BLink).

Coordinates

chrA06:+:16678159..16680704

Molecular Weight (calculated)

61776.2 Da

IEP (calculated)

8.152

GRAVY (calculated)

-0.575

Length

534 amino acids

Sequence
(BLAST)

001: MRSSPSKNEP GGGHSRNFTN WSPFVKSSGF GISPNRSYAL LSLLTLLIVG AFISTRILLD PTVLLEKEAV TTKTRSHTIF PKYPPPTPVT TQSPKPEFTL
101: HCSANDTNAT CPRNNYPATE SFGEDAPTAT CPDYFRWIHE DLRPWAKTGI TREALERARK TANFRLAIVG GRVYVEKFQD AFQTRDVFTI WGFLQLLRKY
201: PGKIPDLELM FDCVDWPVVR ALDFAGVDAP SPPPLFRYCG NEETLDIVFP DWSFWGWSEV NIKPWESLLK ELREGNQRST WINREPYAYW KGNPSVAETR
301: QDLMKCNVSE EHEWNARVYA QDWIRESKEG YKQSDLASQC HHRYKIYIEG SAWSVSEKYI LACDSVTLLV RPHYYDFFTR GLLPAHHYWP VREHDKCRSI
401: KFAVHWGNSH IQKAQDIGKT ASEFIQQELK MDYVYDYMYH LLTGYAKLLQ FKPEIPQNAM EICSETMACP RSGNERKFMT ESLVKHPAET GPCTMPPPYD
501: PASFYAVEKR KQSTTKRILQ WEMKYWNKQN QTGS

Best Arabidopsis Sequence Match ( AT5G23850.1 )
(BLAST)

001: MRNSPSKNGS AGGHSRTYTD TIWSPFVKSG LGISPNRSYA LVSLLILLIV GAFISTRLLL DTTVLLEKKA ATTTTTKTQT QTITPKYPRP TTVITQSPKP
101: EFTLHCSANE TTASCPSNKY PTTTSFEDDD TNHPPTATCP DYFRWIHEDL RPWSRTGITR EALERAKKTA TFRLAIVGGK IYVEKFQDAF QTRDVFTIWG
201: FLQLLRKYPG KIPDLELMFD CVDWPVVRAT EFAGANAPSP PPLFRYCGNE ETLDIVFPDW SFWGWAEVNI KPWESLLKEL REGNERTKWI NREPYAYWKG
301: NPMVAETRQD LMKCNVSEEH EWNARLYAQD WIKESKEGYK QSDLASQCHH RYKIYIEGSA WSVSEKYILA CDSVTLLVKP HYYDFFTRGL LPAHHYWPVR
401: EHDKCRSIKF AVDWGNSHIQ KAQDIGKAAS DFIQQDLKMD YVYDYMYHLL TEYSKLLQFK PEIPRNAVEI CSETMACLRS GNERKFMTES LVKQPADSGP
501: CAMPPPYDPA TYYEVVKRKQ STNMRILQWE MKYWSKQNQT GS

Arabidopsis Description

At5g23850 [Source:UniProtKB/TrEMBL;Acc:Q9FF95]
SUBAcon: [mitochondrion,endoplasmic reticulum,plastid,peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.