Factsheet for AT5G23850.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, endoplasmic reticulum, plastid, peroxisome

Predictor Summary:

plastid 2
mitochondrion 3
endoplasmic reticulum 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX88050	Canola	plastid	86.35	87.64
CDX80388	Canola	plastid	85.79	86.92
Bra009709.1-P	Field mustard	plastid	85.61	86.89
AT3G48980.2	Thale cress	plastid	73.8	73.39
VIT_16s0050g00190.t01	Wine grape	nucleus	35.61	68.93
GSMUA_Achr5P12260_001	Banana	mitochondrion	47.05	67.11
VIT_16s0050g00160.t01	Wine grape	endoplasmic reticulum, golgi, vacuole	59.23	64.33
KRH08971	Soybean	cytosol	28.04	63.6
KRH09011	Soybean	cytosol	60.89	61.8
KRH09038	Soybean	cytosol	30.63	61.48
KRH08981	Soybean	plastid	42.25	60.26
KRH09010	Soybean	cytosol, peroxisome, plasma membrane	58.12	60.0
KRH08960	Soybean	plastid	22.88	59.33
Os02t0642700-01	Rice	plastid	50.92	58.23
PGSC0003DMT400037089	Potato	endoplasmic reticulum, golgi, vacuole	54.61	57.59
Solyc03g025760.2.1	Tomato	endoplasmic reticulum, golgi	54.24	57.2
KRH09051	Soybean	cytosol, nucleus, plasma membrane	28.23	56.67
KRH38478	Soybean	cytosol	60.89	56.22
HORVU6Hr1G060750.4	Barley	cytosol, peroxisome	50.55	55.13
Solyc03g025770.2.1	Tomato	endoplasmic reticulum, golgi, vacuole	50.55	55.02
TraesCS2B01G093400.1	Wheat	golgi, mitochondrion, plastid	50.37	54.38
KRH08953	Soybean	cytosol, extracellular, nucleus	14.39	53.79
TraesCS6A01G237500.1	Wheat	cytosol, mitochondrion	44.65	51.6
Zm00001d002836_P006	Maize	plastid	51.11	51.2
KRG88606	Soybean	cytosol	20.3	51.16
EES07545	Sorghum	plastid	52.03	51.09
Zm00001d051287_P001	Maize	plastid	51.84	51.0
AT3G61290.1	Thale cress	cytosol	42.62	50.77
TraesCS6D01G220200.2	Wheat	cytosol, mitochondrion	44.83	50.73
EES11181	Sorghum	plastid	51.66	50.45
AT3G61270.1	Thale cress	cytosol, golgi, plasma membrane	45.94	50.0
TraesCS2D01G365600.1	Wheat	plastid	50.74	49.55
TraesCSU01G025200.1	Wheat	plastid	51.11	49.2
TraesCS2B01G386200.1	Wheat	plastid	50.18	49.19
TraesCS2A01G368900.2	Wheat	plastid	50.0	48.83
Os04t0534100-01	Rice	mitochondrion	39.11	48.4
KRG88612	Soybean	cytosol	24.72	47.86
AT2G45830.1	Thale cress	mitochondrion	45.76	47.42
TraesCS6B01G266000.1	Wheat	plastid	52.95	46.97
AT3G61280.1	Thale cress	plasma membrane	43.54	44.03
AT2G45840.1	Thale cress	plasma membrane	42.25	43.79
AT1G63420.1	Thale cress	mitochondrion	46.68	43.77
AT1G07220.1	Thale cress	mitochondrion	39.3	42.01
KRG88496	Soybean	cytosol	11.44	35.43
KRH09043	Soybean	cytosol, golgi, mitochondrion, plastid	11.81	35.16

Protein Annotations

MapMan:35.2	EntrezGene:832450	ProteinID:AED93222.1	EMBL:AK221455	ArrayExpress:AT5G23850	EnsemblPlantsGene:AT5G23850
RefSeq:AT5G23850	TAIR:AT5G23850	RefSeq:AT5G23850-TAIR-G	EnsemblPlants:AT5G23850.1	TAIR:AT5G23850.1	ProteinID:BAB10058.1
EMBL:BT014854	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005768	GO:GO:0005794	GO:GO:0005802	GO:GO:0006629	GO:GO:0006664
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0012505	GO:GO:0016020	GO:GO:0016021
GO:GO:0016740	GO:GO:0046527	EMBL:KJ138669	InterPro:LipoPS_modifying	RefSeq:NP_197774.1	PFAM:PF05686
PO:PO:0000013	PO:PO:0000037	PO:PO:0000230	PO:PO:0000293	PO:PO:0001054	PO:PO:0001078
PO:PO:0001081	PO:PO:0001185	PO:PO:0004507	PO:PO:0005052	PO:PO:0007064	PO:PO:0007095
PO:PO:0007098	PO:PO:0007103	PO:PO:0007115	PO:PO:0007123	PO:PO:0007611	PO:PO:0007616
PO:PO:0008019	PO:PO:0009005	PO:PO:0009006	PO:PO:0009009	PO:PO:0009010	PO:PO:0009025
PO:PO:0009029	PO:PO:0009030	PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009047
PO:PO:0009052	PO:PO:0020030	PO:PO:0020038	PO:PO:0020100	PO:PO:0020137	PO:PO:0025022
PO:PO:0025281	PANTHER:PTHR12203	PANTHER:PTHR12203:SF59	UniProt:Q9FF95	SMART:SM00672	TMHMM:TMhelix
UniParc:UPI000009E6EA	SEG:seg	:	:	:	:

Description

At5g23850 [Source:UniProtKB/TrEMBL;Acc:Q9FF95]

Coordinates

chr5:+:8037798..8040941

Molecular Weight (calculated)

62590.2 Da

IEP (calculated)

8.142

GRAVY (calculated)

-0.558

Length

542 amino acids

Sequence
(BLAST)

001: MRNSPSKNGS AGGHSRTYTD TIWSPFVKSG LGISPNRSYA LVSLLILLIV GAFISTRLLL DTTVLLEKKA ATTTTTKTQT QTITPKYPRP TTVITQSPKP
101: EFTLHCSANE TTASCPSNKY PTTTSFEDDD TNHPPTATCP DYFRWIHEDL RPWSRTGITR EALERAKKTA TFRLAIVGGK IYVEKFQDAF QTRDVFTIWG
201: FLQLLRKYPG KIPDLELMFD CVDWPVVRAT EFAGANAPSP PPLFRYCGNE ETLDIVFPDW SFWGWAEVNI KPWESLLKEL REGNERTKWI NREPYAYWKG
301: NPMVAETRQD LMKCNVSEEH EWNARLYAQD WIKESKEGYK QSDLASQCHH RYKIYIEGSA WSVSEKYILA CDSVTLLVKP HYYDFFTRGL LPAHHYWPVR
401: EHDKCRSIKF AVDWGNSHIQ KAQDIGKAAS DFIQQDLKMD YVYDYMYHLL TEYSKLLQFK PEIPRNAVEI CSETMACLRS GNERKFMTES LVKQPADSGP
501: CAMPPPYDPA TYYEVVKRKQ STNMRILQWE MKYWSKQNQT GS

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.