Factsheet for VIT_16s0050g00190.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 2
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_02s0025g03710.t01	Wine grape	cytosol	72.14	74.26
KRH08971	Soybean	cytosol	59.64	69.87
KRH09038	Soybean	cytosol	62.86	65.19
KRH08953	Soybean	cytosol, extracellular, nucleus	29.29	56.55
KRH09051	Soybean	cytosol, nucleus, plasma membrane	53.93	55.93
VIT_15s0046g03130.t01	Wine grape	cytosol	44.29	55.86
VIT_16s0050g00160.t01	Wine grape	endoplasmic reticulum, golgi, vacuole	98.21	55.11
KRG88606	Soybean	cytosol	41.43	53.95
VIT_15s0046g03100.t01	Wine grape	mitochondrion	24.64	53.91
KRG88612	Soybean	cytosol	53.21	53.21
GSMUA_Achr5P12260_001	Banana	mitochondrion	70.0	51.58
VIT_15s0046g03110.t01	Wine grape	cytosol	62.14	46.28
VIT_15s0046g03140.t01	Wine grape	cytosol	37.14	44.64
VIT_15s0046g03120.t01	Wine grape	cytosol	63.21	41.07
KRH08981	Soybean	plastid	55.36	40.79
PGSC0003DMT400037089	Potato	endoplasmic reticulum, golgi, vacuole	73.93	40.27
Solyc03g025760.2.1	Tomato	endoplasmic reticulum, golgi	73.21	39.88
VIT_15s0046g03050.t01	Wine grape	cytosol	59.64	39.48
VIT_15s0046g03080.t01	Wine grape	cytosol	59.29	39.24
TraesCS6A01G237500.1	Wheat	cytosol, mitochondrion	65.36	39.02
TraesCS6D01G220200.2	Wheat	cytosol, mitochondrion	66.07	38.62
KRG88496	Soybean	cytosol	23.93	38.29
KRH09011	Soybean	cytosol	72.86	38.2
Os02t0642700-01	Rice	plastid	64.64	38.19
Solyc03g025770.2.1	Tomato	endoplasmic reticulum, golgi, vacuole	67.14	37.75
KRH09043	Soybean	cytosol, golgi, mitochondrion, plastid	24.29	37.36
KRH09010	Soybean	cytosol, peroxisome, plasma membrane	68.93	36.76
HORVU6Hr1G060750.4	Barley	cytosol, peroxisome	65.0	36.62
Bra009709.1-P	Field mustard	plastid	68.57	35.96
TraesCS2B01G093400.1	Wheat	golgi, mitochondrion, plastid	63.93	35.66
AT5G23850.1	Thale cress	endoplasmic reticulum, mitochondrion, peroxisome, plastid	68.93	35.61
CDX88050	Canola	plastid	67.5	35.39
CDX80388	Canola	plastid	67.5	35.33
Zm00001d002836_P006	Maize	plastid	67.5	34.94
Bra018021.1-P	Field mustard	golgi	66.79	34.63
EES11181	Sorghum	plastid	68.21	34.41
KRH38478	Soybean	cytosol	71.79	34.24
CDY08097	Canola	plastid	66.79	34.19
CDY05887	Canola	golgi	66.43	34.0
TraesCS2B01G386200.1	Wheat	plastid	67.14	34.0
AT3G48980.2	Thale cress	plastid	66.07	33.95
VIT_15s0046g03150.t01	Wine grape	golgi	62.86	33.91
TraesCS2D01G365600.1	Wheat	plastid	66.79	33.69
VIT_15s0046g03070.t01	Wine grape	golgi	62.5	33.33
TraesCS2A01G368900.2	Wheat	plastid	65.0	32.79
Zm00001d051287_P001	Maize	plastid	63.21	32.12
TraesCSU01G025200.1	Wheat	plastid	63.57	31.62
EES07545	Sorghum	plastid	61.43	31.16
VIT_15s0046g03090.t01	Wine grape	cytoskeleton, golgi, nucleus	59.29	30.91
TraesCS6B01G266000.1	Wheat	plastid	65.0	29.79
Os04t0534100-01	Rice	mitochondrion	42.5	27.17
VIT_06s0004g06630.t01	Wine grape	plasma membrane	40.36	24.35
KRH08960	Soybean	plastid	11.79	15.79
VIT_15s0046g03060.t01	Wine grape	cytosol	6.07	14.29
VIT_02s0025g03720.t01	Wine grape	endoplasmic reticulum, extracellular, plasma membrane	0.71	0.9

Protein Annotations

EntrezGene:100854043	wikigene:100854043	MapMan:35.2	ProteinID:CCB47886	ProteinID:CCB47886.1	UniProt:F6H6P3
EMBL:FN595243	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005623	GO:GO:0006629
GO:GO:0006664	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0012505	GO:GO:0016740
GO:GO:0046527	EntrezGene:LOC100854043	wikigene:LOC100854043	InterPro:LipoPS_modifying	PFAM:PF05686	PANTHER:PTHR12203
PANTHER:PTHR12203:SF59	SMART:SM00672	UniParc:UPI0002108408	ArrayExpress:VIT_16s0050g00190	EnsemblPlantsGene:VIT_16s0050g00190	EnsemblPlants:VIT_16s0050g00190.t01
RefSeq:XP_003634087	RefSeq:XP_003634087.1	:	:	:	:

Description

No Description!

Coordinates

chr16:+:17013691..17017537

Molecular Weight (calculated)

33010.6 Da

IEP (calculated)

8.924

GRAVY (calculated)

-0.660

Length

280 amino acids

Sequence
(BLAST)

001: MVSSLRPEIN IKPWESLLKD LKEGNKRSRW MEREPYAYWK GNPAVAATRL DLLKCNVSDK QDWNARVYTQ DWIRESQEGY KQSDLASQCI HRYKIYIEGS
101: AWSVSQKYIL ACDSVTLLVK PHYYDFFTRS LMPVHHYWPI REDDKCRSIK FAVDWGNRHK QKAQSIGKAA SDFIQEDLKM DNVYDYMFHL LNEYAKLLKF
201: KPTVPEKAVE LCSERMGCGA EGLKKKFMME SMVKYPMDAS PCTMPPPFSP LELQTFLNRK VNSIKQVEAW EKKFWENQNT

Best Arabidopsis Sequence Match ( AT2G45830.2 )
(BLAST)

001: MLEKARRTAH FRVVILDGRV YVKKYRKSIQ TRDVFTLWGI VQLLRWYPGR LPDLELMFDP DDRPTVRSKD FQGQQHPAPP PLFRYCSDDA SLDIVFPDWS
101: FWGWAEVNIK PWDKSLVAIE EGNKMTQWKD RVAYAYWRGN PNVAPTRRDL LRCNVSAQED WNTRLYIQDW DRESREGFKN SNLENQCTHR YKIYIEGWAW
201: SVSEKYIMAC DSMTLYVRPM FYDFYVRGMM PLQHYWPIRD TSKCTSLKFA VHWGNTHLDQ ASKIGEEGSR FIREEVKMEY VYDYMFHLMN EYAKLLKFKP
301: EIPWGATEIT PDIMGCSATG RWRDFMEESM VMFPSEESPC EMPSPFNPHD LKEILERKTN LTRQVEWWED QYFHDLANIK KP

Arabidopsis Description

DTA2Downstream target of AGL15 2 [Source:UniProtKB/TrEMBL;Acc:F4IH50]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.