Factsheet for VIT_15s0046g03070.t01

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

cytosol 2
golgi 2
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	cytosol, golgi, mitochondrion, plastid
BaCelLo:	cytosol
MultiLoc:	golgi
Plant-mPloc:	cytosol, plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_15s0046g03120.t01	Wine grape	cytosol	80.38	97.91
VIT_15s0046g03050.t01	Wine grape	cytosol	63.43	78.72
VIT_15s0046g03080.t01	Wine grape	cytosol	60.38	74.94
VIT_16s0050g00190.t01	Wine grape	nucleus	33.33	62.5
VIT_02s0025g03710.t01	Wine grape	cytosol	31.24	60.29
VIT_15s0046g03140.t01	Wine grape	cytosol	25.52	57.51
GSMUA_Achr5P12260_001	Banana	mitochondrion	40.76	56.32
VIT_16s0050g00160.t01	Wine grape	endoplasmic reticulum, golgi, vacuole	52.38	55.11
VIT_15s0046g03100.t01	Wine grape	mitochondrion	13.33	54.69
VIT_15s0046g03110.t01	Wine grape	cytosol	39.05	54.52
Solyc01g094390.2.1	Tomato	endoplasmic reticulum, golgi, vacuole	47.43	52.75
VIT_15s0046g03090.t01	Wine grape	cytoskeleton, golgi, nucleus	53.71	52.51
Os02t0642700-01	Rice	plastid	45.71	50.63
VIT_15s0046g03150.t01	Wine grape	golgi	49.71	50.29
HORVU6Hr1G060750.4	Barley	cytosol, peroxisome	45.71	48.29
TraesCS2B01G093400.1	Wheat	golgi, mitochondrion, plastid	46.1	48.21
VIT_15s0046g03130.t01	Wine grape	cytosol	20.38	48.2
VIT_15s0046g03060.t01	Wine grape	cytosol	10.67	47.06
Zm00001d002836_P006	Maize	plastid	47.24	45.84
Zm00001d051287_P001	Maize	plastid	48.0	45.73
EES07545	Sorghum	plastid	48.0	45.65
TraesCS6A01G237500.1	Wheat	cytosol, mitochondrion	40.76	45.63
TraesCS2B01G386200.1	Wheat	plastid	47.81	45.39
VIT_02s0025g03720.t01	Wine grape	endoplasmic reticulum, extracellular, plasma membrane	19.05	45.25
TraesCS2D01G365600.1	Wheat	plastid	47.43	44.86
TraesCS6D01G220200.2	Wheat	cytosol, mitochondrion	40.76	44.68
TraesCS2A01G368900.2	Wheat	plastid	47.05	44.5
EES11181	Sorghum	plastid	47.05	44.5
TraesCSU01G025200.1	Wheat	plastid	47.43	44.23
Os04t0534100-01	Rice	mitochondrion	36.19	43.38
TraesCS6B01G266000.1	Wheat	plastid	47.43	40.75
VIT_06s0004g06630.t01	Wine grape	plasma membrane	32.76	37.07
PGSC0003DMT400000098	Potato	cytosol	47.24	28.6

Protein Annotations

EntrezGene:100241442	wikigene:100241442	EntrezGene:100255071	wikigene:100255071	MapMan:35.2	EMBL:AM472559
ProteinID:CAN70600	ProteinID:CAN70600.1	ProteinID:CCB62398	ProteinID:CCB62398.1	UniProt:F6I602	EMBL:FN596755
GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005623	GO:GO:0006629	GO:GO:0006664
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0012505	GO:GO:0016020	GO:GO:0016021
GO:GO:0016740	GO:GO:0046527	EntrezGene:LOC100241442	wikigene:LOC100241442	EntrezGene:LOC100255071	wikigene:LOC100255071
InterPro:LipoPS_modifying	PFAM:PF05686	PANTHER:PTHR12203	PANTHER:PTHR12203:SF59	SMART:SM00672	TMHMM:TMhelix
UniParc:UPI000210AB52	ArrayExpress:VIT_15s0046g03070	EnsemblPlantsGene:VIT_15s0046g03070	EnsemblPlants:VIT_15s0046g03070.t01	RefSeq:XP_002273194	RefSeq:XP_002273194.2
RefSeq:XP_002273411	RefSeq:XP_002273411.2	RefSeq:XP_019081177.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr15:-:19693653..19695701

Molecular Weight (calculated)

60757.2 Da

IEP (calculated)

8.327

GRAVY (calculated)

-0.458

Length

525 amino acids

Sequence
(BLAST)

001: MGKVVRNRKL SHTGETAPNQ NYGAGLAGPF KKGATVTVSL FTIILIFIGA LVSTRWINVS ILTGDFLKKT LNYTSPTKPH SQKFEYSLNC REGNVSQTCP
101: VTGPVAFEPS EPPSETCPEY FRWIYEDLRP WMDTGITRAM VEKARPAASI RIVVVDGKVY MEKYKRVNHN RDEFTIWGIL QLLRMYPEKL PDFDLMFECR
201: DRPMIKTHLY QGPDATVPPP LFHYCGDDET YDIVFPDWSF WGWPETNIKP WNGFKKDLKE GNYRTKWIDR EPYAYWKGNV KMGVVRKELF KCRNTDEQDW
301: NARLYIMDWG REVQSGFKTS DLASQCTHRY KIYTEGIGWS VSEKYILACD SVTLLVKPQY YEFFTRSLQP LVHYWPIKHK DMCKSIKFAT DWCNNHTEKA
401: QKIGKAGSGF VQEEIKMKFV YDYMFHLLSM YAKLLKYKPT VPPMAVEFCP EMMACAVEGL EKDYKLQSMV KSPSDTGPCI MPPPFNSAEL KDVLEKKDHV
501: MKQVETWEES GSVGEETIAN ILKAK

Best Arabidopsis Sequence Match ( AT5G23850.1 )
(BLAST)

001: MRNSPSKNGS AGGHSRTYTD TIWSPFVKSG LGISPNRSYA LVSLLILLIV GAFISTRLLL DTTVLLEKKA ATTTTTKTQT QTITPKYPRP TTVITQSPKP
101: EFTLHCSANE TTASCPSNKY PTTTSFEDDD TNHPPTATCP DYFRWIHEDL RPWSRTGITR EALERAKKTA TFRLAIVGGK IYVEKFQDAF QTRDVFTIWG
201: FLQLLRKYPG KIPDLELMFD CVDWPVVRAT EFAGANAPSP PPLFRYCGNE ETLDIVFPDW SFWGWAEVNI KPWESLLKEL REGNERTKWI NREPYAYWKG
301: NPMVAETRQD LMKCNVSEEH EWNARLYAQD WIKESKEGYK QSDLASQCHH RYKIYIEGSA WSVSEKYILA CDSVTLLVKP HYYDFFTRGL LPAHHYWPVR
401: EHDKCRSIKF AVDWGNSHIQ KAQDIGKAAS DFIQQDLKMD YVYDYMYHLL TEYSKLLQFK PEIPRNAVEI CSETMACLRS GNERKFMTES LVKQPADSGP
501: CAMPPPYDPA TYYEVVKRKQ STNMRILQWE MKYWSKQNQT GS

Arabidopsis Description

At5g23850 [Source:UniProtKB/TrEMBL;Acc:Q9FF95]
SUBAcon: [mitochondrion,endoplasmic reticulum,plastid,peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.