Factsheet for VIT_15s0046g03080.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_15s0046g03050.t01	Wine grape	cytosol	78.96	78.96
VIT_15s0046g03120.t01	Wine grape	cytosol	75.41	74.01
VIT_15s0046g03070.t01	Wine grape	golgi	74.94	60.38
VIT_02s0025g03710.t01	Wine grape	cytosol	38.3	59.56
VIT_16s0050g00190.t01	Wine grape	nucleus	39.24	59.29
GSMUA_Achr5P12260_001	Banana	mitochondrion	52.01	57.89
VIT_15s0046g03140.t01	Wine grape	cytosol	30.26	54.94
VIT_15s0046g03110.t01	Wine grape	cytosol	48.46	54.52
VIT_15s0046g03060.t01	Wine grape	cytosol	14.89	52.94
VIT_16s0050g00160.t01	Wine grape	endoplasmic reticulum, golgi, vacuole	60.52	51.3
Solyc01g094390.2.1	Tomato	endoplasmic reticulum, golgi, vacuole	56.97	51.06
VIT_15s0046g03100.t01	Wine grape	mitochondrion	15.37	50.78
VIT_15s0046g03090.t01	Wine grape	cytoskeleton, golgi, nucleus	62.41	49.16
Os02t0642700-01	Rice	plastid	54.85	48.95
VIT_15s0046g03130.t01	Wine grape	cytosol	25.53	48.65
HORVU6Hr1G060750.4	Barley	cytosol, peroxisome	55.56	47.28
TraesCS2B01G093400.1	Wheat	golgi, mitochondrion, plastid	56.03	47.21
VIT_15s0046g03150.t01	Wine grape	golgi	56.74	46.24
TraesCS6A01G237500.1	Wheat	cytosol, mitochondrion	51.06	46.06
TraesCS6D01G220200.2	Wheat	cytosol, mitochondrion	50.59	44.68
Zm00001d051287_P001	Maize	plastid	56.03	43.01
VIT_02s0025g03720.t01	Wine grape	endoplasmic reticulum, extracellular, plasma membrane	22.46	42.99
Zm00001d002836_P006	Maize	plastid	54.61	42.7
TraesCSU01G025200.1	Wheat	plastid	56.5	42.45
EES07545	Sorghum	plastid	55.32	42.39
EES11181	Sorghum	plastid	55.32	42.16
TraesCS2D01G365600.1	Wheat	plastid	54.85	41.8
TraesCS2B01G386200.1	Wheat	plastid	54.61	41.77
TraesCS2A01G368900.2	Wheat	plastid	53.9	41.08
Os04t0534100-01	Rice	mitochondrion	42.08	40.64
TraesCS6B01G266000.1	Wheat	plastid	56.03	38.79
VIT_06s0004g06630.t01	Wine grape	plasma membrane	39.24	35.78
PGSC0003DMT400000098	Potato	cytosol	57.68	28.14

Protein Annotations

EntrezGene:100251698	wikigene:100251698	MapMan:35.2	ProteinID:CCB62397	ProteinID:CCB62397.1	UniProt:F6I601
EMBL:FN596755	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005623	GO:GO:0006629
GO:GO:0006664	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0012505	GO:GO:0016740
GO:GO:0046527	EntrezGene:LOC100251698	wikigene:LOC100251698	InterPro:LipoPS_modifying	PFAM:PF05686	PANTHER:PTHR12203
PANTHER:PTHR12203:SF59	SMART:SM00672	UniParc:UPI00015CA7F5	ArrayExpress:VIT_15s0046g03080	EnsemblPlantsGene:VIT_15s0046g03080	EnsemblPlants:VIT_15s0046g03080.t01
RefSeq:XP_002273350	RefSeq:XP_002273350.2	:	:	:	:

Description

No Description!

Coordinates

chr15:-:19697832..19699519

Molecular Weight (calculated)

49573.8 Da

IEP (calculated)

8.490

GRAVY (calculated)

-0.518

Length

423 amino acids

Sequence
(BLAST)

001: MTKTCPVTLL TTFEPSNLST GTCPEYFRWI YEDLKPWTET GITRDMVERA KTPAHIRVVV VDGKVYTEKY KWVFQTRDVF TIWGILQVLR MYPGKLPDFD
101: LMFECGDKPV IKKHDYQGLN ATAPPLFHYC GDDETLDIVF PDWSFWGWPE IRIKPWSTLR KDLREGNNKT KWVDREPYAY WKGNFKMGVT RHELSKCSKT
201: NEQDWNARIY NMDWLQEMQN GFKSADLSTQ CTHKYKIYAE GAAWSVSEKY ILACDSVTLL VKPQYYDFFT RSLQPLVHYW PIKLKDMCKS IKFATEWCNN
301: HTQKAHEIRN AGSSFVQEEL RMKFVYDYMF HLLSAYAKLF KYKPTVPPGA VEVCPETMVC PVKGLQKKYK IQSMVKSPSD TGPCVMPPPY DPAELRDMLE
401: RKDHVMKQVE MLEEGSLKNL KAK

Best Arabidopsis Sequence Match ( AT5G23850.1 )
(BLAST)

001: MRNSPSKNGS AGGHSRTYTD TIWSPFVKSG LGISPNRSYA LVSLLILLIV GAFISTRLLL DTTVLLEKKA ATTTTTKTQT QTITPKYPRP TTVITQSPKP
101: EFTLHCSANE TTASCPSNKY PTTTSFEDDD TNHPPTATCP DYFRWIHEDL RPWSRTGITR EALERAKKTA TFRLAIVGGK IYVEKFQDAF QTRDVFTIWG
201: FLQLLRKYPG KIPDLELMFD CVDWPVVRAT EFAGANAPSP PPLFRYCGNE ETLDIVFPDW SFWGWAEVNI KPWESLLKEL REGNERTKWI NREPYAYWKG
301: NPMVAETRQD LMKCNVSEEH EWNARLYAQD WIKESKEGYK QSDLASQCHH RYKIYIEGSA WSVSEKYILA CDSVTLLVKP HYYDFFTRGL LPAHHYWPVR
401: EHDKCRSIKF AVDWGNSHIQ KAQDIGKAAS DFIQQDLKMD YVYDYMYHLL TEYSKLLQFK PEIPRNAVEI CSETMACLRS GNERKFMTES LVKQPADSGP
501: CAMPPPYDPA TYYEVVKRKQ STNMRILQWE MKYWSKQNQT GS

Arabidopsis Description

At5g23850 [Source:UniProtKB/TrEMBL;Acc:Q9FF95]
SUBAcon: [mitochondrion,endoplasmic reticulum,plastid,peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.