Factsheet for PGSC0003DMT400078044

Subcellular Localization

min:

: max

Winner_takes_all: golgi, endoplasmic reticulum, mitochondrion

Predictor Summary:

nucleus 2
mitochondrion 3
endoplasmic reticulum 3
plastid 1
extracellular 2
golgi 3
plasma membrane 2
vacuole 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi, mitochondrion
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g076980.2.1	Tomato	unclear	95.46	95.46
KRG98287	Soybean	endoplasmic reticulum, golgi, vacuole	65.44	65.3
GSMUA_Achr7P06580_001	Banana	cytosol	43.2	63.9
VIT_06s0004g06630.t01	Wine grape	plasma membrane	61.99	61.85
KRH30306	Soybean	plastid	65.01	60.69
AT1G07220.1	Thale cress	mitochondrion	63.71	58.19
Bra015563.1-P	Field mustard	mitochondrion	62.42	57.34
CDY06688	Canola	mitochondrion	62.42	57.34
CDY10259	Canola	mitochondrion	62.2	57.26
Bra031558.1-P	Field mustard	endoplasmic reticulum, golgi, mitochondrion	61.99	56.83
CDY09932	Canola	endoplasmic reticulum, golgi	61.77	56.75
CDY59071	Canola	endoplasmic reticulum, golgi, vacuole	61.99	56.5
Os05t0149500-01	Rice	extracellular	34.99	54.73
TraesCS1B01G117800.1	Wheat	mitochondrion	53.13	50.72
Zm00001d024854_P001	Maize	mitochondrion	52.27	50.42
TraesCS1A01G089800.1	Wheat	endoplasmic reticulum, golgi, plastid	52.92	50.41
TraesCS1D01G098300.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	52.27	49.79
EES17717	Sorghum	mitochondrion	53.13	49.5
PGSC0003DMT400000701	Potato	mitochondrion	8.21	49.35
HORVU1Hr1G020420.2	Barley	mitochondrion, plastid	53.35	48.15
PGSC0003DMT400037089	Potato	endoplasmic reticulum, golgi, vacuole	43.63	39.3
PGSC0003DMT400055754	Potato	nucleus	11.45	34.87
PGSC0003DMT400000098	Potato	cytosol	38.66	20.65

Protein Annotations

EnsemblPlants:PGSC0003DMT400078044	EnsemblPlantsGene:PGSC0003DMG400030358	EntrezGene:102588367	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:LipoPS_modifying	PANTHER:PTHR12203	PANTHER:PTHR12203:SF28	PFAM:PF05686	PGSC:PGSC0003DMG400030358	RefSeq:XP_006350920.1
SEG:seg	SMART:SM00672	TMHMM:TMhelix	UniParc:UPI000296AE57	UniProt:M1CZA9	MapMan:35.2

Description

Lipopolysaccharide-modifying protein [Source:PGSC_GENE;Acc:PGSC0003DMG400030358]

Coordinates

chr6:+:57221218..57224548

Molecular Weight (calculated)

53624.3 Da

IEP (calculated)

8.224

GRAVY (calculated)

-0.263

Length

463 amino acids

Sequence
(BLAST)

001: MGIFSRHNRR PSFLPRYVVF FAFLFLALLL FFEVDNLVSQ TKTIVGHNLE PTPWHVFPAK SFDEESTYSK ASTIIQCSYL TCSSNSHVTN IPRSTKPQSE
101: TNKCPDFFKS IRYDLEPWAK SRISINHVME AQKNAAFRVV IVGGKLFVDF YYACVQSRAM FTIWGILQLL RKYPGKVPDV DLMFDCMDKP IINRTEYSSM
201: PLPLFRYCTT PNHYDIPFPD WSFWGWSEIN IRPWNEEFKS IKEGSNSRSW TSKIPVAYWK GNPDVVSPIR LELLNCNDTQ MWRAQIMRQN WTEEAKVGFE
301: KSKLSKQCNH RYKIYAEGYA WSVSLKYILA CGSLPLIITP QYQDFFSRGL IPKKNYWPLP PFDLCSSIKD AVDWGNSNPL EAEAIGKAGQ DFMESLSIDR
401: IYDYMYHLIS EYAKLQDFVP VPPSSALELC INSVLCFADD QQKQFLKKSL VFPSNESPCS LPR

Best Arabidopsis Sequence Match ( AT1G07220.1 )
(BLAST)

001: MGLRLRLRLP HKSSPRSPSY LLLCVLALSF FSFTALLFYK VDDFIAQTKT LAGHNLEPTP WHIFPRKSFS AATKHSQAYR ILQCSYFSCP YKAVVQPKSL
101: HSESGSGRQT HQPQCPDFFR WIHRDLEPWA KTGVTKEHVK RAKANAAFRV VILSGKLYVD LYYACVQSRM MFTIWGILQL LTKYPGMVPD VDMMFDCMDK
201: PIINQTEYQS FPVPLFRYCT NEAHLDIPFP DWSFWGWSET NLRPWEEEFG DIKQGSRRRS WYNKQPRAYW KGNPDVVSPI RLELMKCNHS RLWGAQIMRQ
301: DWAEEAKGGF EQSKLSNQCN HRYKIYAEGY AWSVSLKYIL SCGSMTLIIS PEYEDFFSRG LLPKENYWPI SPTDLCRSIK YAVDWGNSNP SEAETIGKRG
401: QGYMESLSMN RVYDYMFHLI TEYSKLQKFK PEKPASANEV CAGSLLCIAE QKERELLERS RVVPSLDQPC KFPVEDRNRL EWLIQQKNKT IENVRYMEMT
501: RTQRGSK

Arabidopsis Description

F10K1.7 protein [Source:UniProtKB/TrEMBL;Acc:Q9LML4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.