Factsheet for VIT_19s0090g01770.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400076662	Potato	cytosol	39.76	68.49
KRH73870	Soybean	plastid	55.86	57.35
KRH14270	Soybean	plastid	56.46	57.14
AT5G55580.1	Thale cress	plastid	55.86	56.65
Bra028970.1-P	Field mustard	plastid	55.07	56.3
CDY36755	Canola	nucleus, vacuole	55.07	56.19
CDY66686	Canola	extracellular, vacuole	55.07	56.19
Solyc12g015640.1.1	Tomato	plastid	51.29	53.53
GSMUA_Achr3P29890_001	Banana	plastid	53.48	53.06
TraesCS2D01G198500.1	Wheat	plastid	46.12	49.26
Os07t0583200-01	Rice	endoplasmic reticulum, plastid	47.32	47.32
HORVU2Hr1G036490.17	Barley	mitochondrion	46.92	46.92
TraesCS2B01G218100.1	Wheat	plastid	46.52	46.89
TraesCS2A01G189200.1	Wheat	plastid	45.92	46.29
EER97446	Sorghum	mitochondrion	46.52	46.25
Zm00001d006700_P003	Maize	mitochondrion, plastid	46.72	40.8
VIT_08s0007g02500.t01	Wine grape	plastid	14.31	21.3
VIT_03s0063g02460.t01	Wine grape	plastid	11.53	21.01
VIT_01s0010g03740.t01	Wine grape	plastid	12.52	20.13
VIT_03s0038g04180.t01	Wine grape	cytosol, plastid	13.32	18.93
VIT_10s0003g04040.t01	Wine grape	plastid	12.92	18.47
VIT_14s0171g00230.t01	Wine grape	plastid	15.71	15.96
VIT_07s0104g00720.t01	Wine grape	mitochondrion	16.1	15.43
VIT_11s0016g02240.t01	Wine grape	mitochondrion	14.12	14.76
VIT_03s0063g02590.t01	Wine grape	cytosol	15.11	13.36
VIT_09s0054g01030.t01	Wine grape	plastid	15.9	13.31
VIT_16s0098g00970.t01	Wine grape	plastid	13.92	3.47

Protein Annotations

Gene3D:1.25.70.10	EntrezGene:100260706	wikigene:100260706	MapMan:15.6.2.2	ProteinID:CCB50729	ProteinID:CCB50729.1
UniProt:F6HER7	EMBL:FN595751	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003690
GO:GO:0003723	GO:GO:0003727	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006139	GO:GO:0006355	GO:GO:0006950	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0008380	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009628
GO:GO:0009651	GO:GO:0009658	GO:GO:0009987	GO:GO:0016043	GO:GO:0019843	GO:GO:0032502
GO:GO:0042255	GO:GO:0048364	GO:GO:0048367	InterPro:IPR038538	EntrezGene:LOC100260706	wikigene:LOC100260706
InterPro:MTERF	InterPro:MTERF_sf	PFAM:PF02536	PANTHER:PTHR13068	PANTHER:PTHR13068:SF13	SMART:SM00733
UniParc:UPI000210A715	ArrayExpress:VIT_19s0090g01770	EnsemblPlantsGene:VIT_19s0090g01770	EnsemblPlants:VIT_19s0090g01770.t01	unigene:Vvi.22476	unigene:Vvi.22807
RefSeq:XP_002276224	RefSeq:XP_002276224.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr19:+:7803566..7814243

Molecular Weight (calculated)

57762.2 Da

IEP (calculated)

9.000

GRAVY (calculated)

-0.656

Length

503 amino acids

Sequence
(BLAST)

001: MAAFYLYTFN LIPHSHSPSA SSNPDSLSNL NSISAKIDKR RSSCRTSGFT VLSTHSNPRI LKSNRRSRYG QVLSPYDTDD NAGDEDGDWF FDDEDSETEE
101: FDADRKKFNS QKGNDTRQGM SFRAFQKVSG GNMANDNFVH EGSRRQLEED QSIRSLKSEG SFNISKGELD VKNGKNTIGS SYHTFNKSED YDSSEMHGIG
201: KLKPRKSTEN KYCRLSEEID LDEKWFPLLD YLSTFGLKES HFIQMYERHM PSLQINACSA QERLEYLSSV GVKHRDIKRI ILRQPQILEY TVENNLKSHV
301: AFLVGLGIPD SRIGHVIAAA PSLFSYSVEN SLKPTVRYLI EEVGIKKNDL GKVVQLSPQI LVQRIDNSWN TRYSFLSREL GAPRDSIVKM VTKHPQLLHY
401: SIEDGFLPRI NFLRSIGMRN SDILKVLTNL TQVLSLSLED NLKPKYMYLV NELRNEVHSL TKYPMYLSLS LDQRIRPRHR DYYSKILQRS MRSEDNRSIS
501: TLS

Best Arabidopsis Sequence Match ( AT5G55580.1 )
(BLAST)

001: MAGFSLYCFK NPRILFTLPS ESPLFVLGSD KCSPATRRPS RKTRGFVVTY AHSNPKIINP KKKSRYGQTL SPYDSDEDDD DDDDDDDDDW LLNDDFAEVT
101: EYEKKKPKSH KQTIAKKSVK KGIVKPEESE TDEDDLDLGI SPNATSEKKK ESWRLDGRGK MSSRKYVEKL YPRLAEEIDI DPKCVPLLDY LSTFGLKESH
201: FVQMYERHMP SLQINVFSAQ ERLDYLLSVG VKHRDIKRML LRQPQILQYT VENNLKAHIS FLMGLGIPNS KIGQIVAATP SLFSYSVENS LRPTIRYLIE
301: EVGIKETDVG KVVQLSPQIL VQRLDITWNT RYMFLSKELG APRDSVVKMV KKHPQLLHYS IDDGFLPRIN FLRSIGMCNS DILKVLTSLT QVLSLSLEDN
401: LKPKYMYLVN ELNNEVHILT KYPMYLSLSL DQRIRPRHRF LVELKKVRKG PFPLSSLVPN DESFCQQWAG TSVDTYLAFR QRLLLKEFAN KYDKRG

Arabidopsis Description

MTERF9Transcription termination factor MTERF9, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FM80]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.