CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, vacuole

Predictor Summary:

plastid 3
extracellular 3
endoplasmic reticulum 2
vacuole 3
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, vacuole
Any Predictor:	plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	extracellular
PProwler:	plastid
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY36755	Canola	nucleus, vacuole	96.75	96.75
AT5G55580.1	Thale cress	plastid	87.63	87.1
PGSC0003DMT400076662	Potato	cytosol	45.23	76.37
KRH73870	Soybean	plastid	63.49	63.88
KRH14270	Soybean	plastid	63.69	63.18
Solyc12g015640.1.1	Tomato	plastid	57.4	58.71
GSMUA_Achr3P29890_001	Banana	plastid	57.0	55.42
VIT_19s0090g01770.t01	Wine grape	plastid	56.19	55.07
EER97446	Sorghum	mitochondrion	53.14	51.78
TraesCS2D01G198500.1	Wheat	plastid	49.29	51.59
Os07t0583200-01	Rice	endoplasmic reticulum, plastid	52.33	51.29
TraesCS2B01G218100.1	Wheat	plastid	51.12	50.5
HORVU2Hr1G036490.17	Barley	mitochondrion	51.32	50.3
TraesCS2A01G189200.1	Wheat	plastid	50.71	50.1
Zm00001d006700_P003	Maize	mitochondrion, plastid	52.94	45.31
CDX99300	Canola	plastid	14.0	25.09
CDY03022	Canola	extracellular	14.4	25.0
CDY45184	Canola	extracellular, mitochondrion	14.2	24.56
CDX92284	Canola	plastid	13.59	24.36
CDX84297	Canola	plastid	14.81	22.12
CDY29073	Canola	cytosol, plastid	13.59	20.0
CDX90610	Canola	cytosol	13.59	20.0
CDY29749	Canola	cytosol	16.63	16.73
CDY16267	Canola	cytosol	16.02	16.29
CDY21931	Canola	golgi, mitochondrion, plastid	17.44	16.26
CDY22091	Canola	golgi, mitochondrion, plastid	17.44	16.2
CDY17890	Canola	mitochondrion	15.42	15.26
CDX79786	Canola	mitochondrion	15.21	15.21
CDY18308	Canola	plastid	15.01	14.83
CDY14326	Canola	plastid	14.81	14.63
CDY13794	Canola	plastid	16.43	12.92
CDY66820	Canola	plastid	16.02	12.7

Protein Annotations

Gene3D:1.25.70.10	MapMan:15.6.2.2	GO:A0A078JLK4	UniProt:A0A078JLK4	EnsemblPlants:CDY66686	ProteinID:CDY66686
ProteinID:CDY66686.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003690	GO:GO:0005488
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
EnsemblPlantsGene:GSBRNA2T00055573001	InterPro:IPR038538	InterPro:MTERF	InterPro:MTERF_sf	PFAM:PF02536	PANTHER:PTHR13068
PANTHER:PTHR13068:SF13	SMART:SM00733	UniParc:UPI0004EAF06C	SEG:seg	:	:

Description

BnaC03g71670DBnaC03g71670D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JLK4]

Coordinates

chrLK035409:+:77..2535

Molecular Weight (calculated)

56858.7 Da

IEP (calculated)

9.210

GRAVY (calculated)

-0.460

Length

493 amino acids

Sequence
(BLAST)

001: MAGFSFSCCC WCLINPPILF SLPSESPLFL LPATRRRGGK IGELVVSNAH SNPKIINPKK KSRYGQTLSP YDSDEEAELD DESDDDDDDW LLNDDFAEVT
101: EYENKKPKSQ KTTIAKKGVK KEAVKTWETD EDDLDNASDK KKKKVEKDSW RLDGRGKVST RKHVAKLYPR LSEEIDIDPK WVPLLDYLST FGLKESHFVQ
201: MYERHMPSLQ INVLSAQERL DYLLSVGVKH RDIKRMLLRQ PQILQYTVEN NLKAHISFLM GLGIPNSKIG QIVAVTPSLF SYSVENSLRP TIRYLIEEVG
301: INENDVGKVV QLSPQILVQR LDITWNTRYM FLSKELGAPR DSVVKMVKRH PQILHYSIDD GFLPRINFLR SIGMCNSDIL KVLTSLTQVL SLSLEDNLKP
401: KYMYLVNELK NEVHILTKYP MYLSLSLDQR IRPRHRFLVE LKKVRKGPFP LSSLVPNDES FCQQWAGTSV DKYLAFRQRL LLKDFANKYE KRG

Best Arabidopsis Sequence Match ( AT5G55580.1 )
(BLAST)

001: MAGFSLYCFK NPRILFTLPS ESPLFVLGSD KCSPATRRPS RKTRGFVVTY AHSNPKIINP KKKSRYGQTL SPYDSDEDDD DDDDDDDDDW LLNDDFAEVT
101: EYEKKKPKSH KQTIAKKSVK KGIVKPEESE TDEDDLDLGI SPNATSEKKK ESWRLDGRGK MSSRKYVEKL YPRLAEEIDI DPKCVPLLDY LSTFGLKESH
201: FVQMYERHMP SLQINVFSAQ ERLDYLLSVG VKHRDIKRML LRQPQILQYT VENNLKAHIS FLMGLGIPNS KIGQIVAATP SLFSYSVENS LRPTIRYLIE
301: EVGIKETDVG KVVQLSPQIL VQRLDITWNT RYMFLSKELG APRDSVVKMV KKHPQLLHYS IDDGFLPRIN FLRSIGMCNS DILKVLTSLT QVLSLSLEDN
401: LKPKYMYLVN ELNNEVHILT KYPMYLSLSL DQRIRPRHRF LVELKKVRKG PFPLSSLVPN DESFCQQWAG TSVDTYLAFR QRLLLKEFAN KYDKRG

Arabidopsis Description

MTERF9Transcription termination factor MTERF9, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FM80]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.