CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 2
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT2G34620.1	Thale cress	plastid	81.21	88.45
KRH12828	Soybean	plastid	55.15	60.26
Solyc02g021430.1.1	Tomato	plastid	53.94	58.17
PGSC0003DMT400080487	Potato	plastid	54.55	58.06
KRH37793	Soybean	plastid	56.06	57.45
VIT_10s0003g04040.t01	Wine grape	plastid	58.48	54.83
GSMUA_Achr6P31220_001	Banana	plastid	34.85	51.11
Os03t0785200-01	Rice	plastid	45.76	48.71
Zm00001d011574_P001	Maize	cytosol, extracellular, plastid	21.82	47.06
OQU90879	Sorghum	plastid	45.15	46.71
TraesCS5A01G423600.1	Wheat	plastid	44.55	45.94
TraesCS5B01G425900.1	Wheat	plastid	45.45	45.73
TraesCS5D01G432100.1	Wheat	plastid	45.15	45.57
CDY03022	Canola	extracellular	35.15	40.85
CDY45184	Canola	extracellular, mitochondrion	34.85	40.35
CDX99300	Canola	plastid	29.09	34.91
CDX92284	Canola	plastid	28.48	34.18
CDX90610	Canola	cytosol	16.67	16.42
CDY29073	Canola	cytosol, plastid	16.36	16.12
CDY29749	Canola	cytosol	23.64	15.92
CDY16267	Canola	cytosol	23.03	15.67
CDY66686	Canola	extracellular, vacuole	22.12	14.81
CDY36755	Canola	nucleus, vacuole	21.82	14.6
CDX79786	Canola	mitochondrion	20.61	13.79
CDY17890	Canola	mitochondrion	20.0	13.25
CDY18308	Canola	plastid	20.0	13.23
CDY14326	Canola	plastid	20.0	13.23
CDY21931	Canola	golgi, mitochondrion, plastid	20.91	13.04
CDY22091	Canola	golgi, mitochondrion, plastid	20.91	12.99
CDY13794	Canola	plastid	24.24	12.76
CDY66820	Canola	plastid	23.64	12.54

Protein Annotations

Gene3D:1.25.70.10	MapMan:15.6.2.2	GO:A0A078D585	EnsemblPlants:CDX84297	ProteinID:CDX84297	ProteinID:CDX84297.1
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003690	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006355	GO:GO:0006950
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009628
GO:GO:0009987	GO:GO:0042646	GO:GO:0071472	EnsemblPlantsGene:GSBRNA2T00141394001	InterPro:IPR038538	InterPro:MTERF
InterPro:MTERF_sf	PFAM:PF02536	PANTHER:PTHR13068	PANTHER:PTHR13068:SF78	SMART:SM00733	SignalP:SignalP-noTM
UniParc:UPI0004EBE0D1	SEG:seg	:	:	:	:

Description

BnaC04g10590D

Coordinates

chrLK031836:-:1540890..1542244

Molecular Weight (calculated)

37148.7 Da

IEP (calculated)

9.153

GRAVY (calculated)

0.045

Length

330 amino acids

Sequence
(BLAST)

001: MPRGSNTHHL FFFLLKAISS LSPSLLTSTM SAALSSSLYI SPKKPSSPQL SQSTKPTTIK TTLHTHPLFS VADQAVTLQM KEKILCLELM GIDSGKALSL
101: NPFLRSASLD SVEAVLNFLQ SKGIYPNDLP RILGMCPKIL TSDIRTELNP VFTFLSSDLH VPDNAFRRVV KKCPRLLIST VEDQLKPALF YLQRLGFKDL
201: DALAYQDPVL LVSSVEHTLI PKLRFLESIG FSRSEAIGMI LRCPALFTFS IENNFKPKLD YFMCEIKGKL ENLKEFPQYF AFSLEKRIKP RHLKSMERGL
301: ELPLALMLKS TDEEFEQLLL QIEPSPVVNV

Best Arabidopsis Sequence Match ( AT2G34620.1 )
(BLAST)

001: MSAALSSSLY ISPKKPSCPQ QSQSTFLSTK PTTIKTNLHS HPLFTVADQT VTLQMKEKIL CLELMGIDSG KALSLNPCLC SAPLDSIQSV LHFLQSKGIY
101: PNDLPRILGM CPKILTSDVR TELYPVFMFL SNDLHVPENA FRRVIKKCPR LLISSVEDQL KPALFYLQRL GLKDLEALAY QDPILLVSSV EHTLIPKLRF
201: LESIGFSRPE AIGMILRCPA LFTFSIENNF KPKLDYFMSE IKGKLENLKE FPQYFAFSLE KRIKPRHLES MERGLELPLS LMLKSTDEEF EQLLTNPSSV
301: ANV

Arabidopsis Description

Mitochondrial transcription termination factor family protein [Source:UniProtKB/TrEMBL;Acc:O64685]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.