Factsheet for Os03t0785200-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G423600.1	Wheat	plastid	82.58	80.0
TraesCS5D01G432100.1	Wheat	plastid	84.19	79.82
TraesCS5B01G425900.1	Wheat	plastid	83.87	79.27
OQU90879	Sorghum	plastid	79.68	77.43
Zm00001d011574_P001	Maize	cytosol, extracellular, plastid	37.1	75.16
GSMUA_Achr6P31220_001	Banana	plastid	37.1	51.11
PGSC0003DMT400080487	Potato	plastid	49.35	49.35
Solyc02g021430.1.1	Tomato	plastid	48.71	49.35
KRH12828	Soybean	plastid	48.06	49.34
AT2G34620.1	Thale cress	plastid	47.42	48.51
VIT_10s0003g04040.t01	Wine grape	plastid	52.58	46.31
CDX84297	Canola	plastid	48.71	45.76
KRH37793	Soybean	plastid	47.42	45.65
Os03t0360600-00	Rice	cytosol, mitochondrion	28.39	29.24
Os02t0577501-00	Rice	plastid	20.0	21.99
Os08t0515800-01	Rice	cytosol	17.42	16.22
Os07t0583200-01	Rice	endoplasmic reticulum, plastid	23.87	14.71
Os02t0783100-01	Rice	mitochondrion	21.94	14.02
Os05t0404000-01	Rice	plastid	21.94	13.39
Os07t0134700-00	Rice	plastid	23.55	12.01
Os09t0560100-00	Rice	plasma membrane, plastid	22.26	11.27

Protein Annotations

Gene3D:1.25.70.10	MapMan:15.6.2.2	EntrezGene:4334343	ProteinID:BAF13395.1	ProteinID:BAS86721.1	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003690	GO:GO:0003723	GO:GO:0003727	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006355
GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0008380	GO:GO:0009058	GO:GO:0009507
GO:GO:0009536	GO:GO:0009628	GO:GO:0009658	GO:GO:0009987	GO:GO:0016043	GO:GO:0019843
GO:GO:0032502	GO:GO:0042255	GO:GO:0042646	GO:GO:0071472	InterPro:IPR038538	InterPro:MTERF
InterPro:MTERF_sf	EnsemblPlantsGene:Os03g0785200	EnsemblPlants:Os03t0785200-01	PFAM:PF02536	PANTHER:PTHR13068	PANTHER:PTHR13068:SF78
UniProt:Q0DMZ3	SMART:SM00733	UniParc:UPI0000E12263	RefSeq:XP_015630575.1	SEG:seg	:

Description

Mitochodrial transcription termination factor-related family protein. (Os03t0785200-01)

Coordinates

chr3:-:32590198..32591451

Molecular Weight (calculated)

33930.5 Da

IEP (calculated)

8.930

GRAVY (calculated)

0.096

Length

310 amino acids

Sequence
(BLAST)

001: MPLCSFYAST SLPVAKPHSL PSSSSSKPYT ATPAPAPTAA SASASAAALS LHLPELPSRV KDKILSLELM GVDYGRALAL NPALRDAAPE SIHAVVTFLQ
101: SRGLHFKDLG RVFGMCPSLL TASVRADLRP VFAFLTDDLG IPDTAYRRVV VKCPRVLACS VRDQLRPALL YLRRLGFRDA RALAFQDPIL LVSSVERTMI
201: PKLDFLAGLG MHRDDAVAMV LRCPALFTFS IERNYKPKFE YLVAEMGGGV HDIKAFPQYF TFSLDKRIAP RHRAAADAGV SLPLPDMLKA TDEEFMEMLD
301: KEIELQKQAA

Best Arabidopsis Sequence Match ( AT2G34620.1 )
(BLAST)

001: MSAALSSSLY ISPKKPSCPQ QSQSTFLSTK PTTIKTNLHS HPLFTVADQT VTLQMKEKIL CLELMGIDSG KALSLNPCLC SAPLDSIQSV LHFLQSKGIY
101: PNDLPRILGM CPKILTSDVR TELYPVFMFL SNDLHVPENA FRRVIKKCPR LLISSVEDQL KPALFYLQRL GLKDLEALAY QDPILLVSSV EHTLIPKLRF
201: LESIGFSRPE AIGMILRCPA LFTFSIENNF KPKLDYFMSE IKGKLENLKE FPQYFAFSLE KRIKPRHLES MERGLELPLS LMLKSTDEEF EQLLTNPSSV
301: ANV

Arabidopsis Description

Mitochondrial transcription termination factor family protein [Source:UniProtKB/TrEMBL;Acc:O64685]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.