Factsheet for Zm00001d011574_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, extracellular, cytosol

Predictor Summary:

extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular, plastid
Any Predictor:	cytosol, mitochondrion, secretory
iPSORT:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU90879	Sorghum	plastid	82.35	39.5
TraesCS5A01G423600.1	Wheat	plastid	79.08	37.81
Os03t0785200-01	Rice	plastid	75.16	37.1
TraesCS5D01G432100.1	Wheat	plastid	79.08	37.0
TraesCS5B01G425900.1	Wheat	plastid	78.43	36.59
KRH12828	Soybean	plastid	48.37	24.5
KRH37793	Soybean	plastid	49.67	23.6
AT2G34620.1	Thale cress	plastid	45.75	23.1
PGSC0003DMT400080487	Potato	plastid	45.75	22.58
Solyc02g021430.1.1	Tomato	plastid	44.44	22.22
VIT_10s0003g04040.t01	Wine grape	plastid	50.33	21.88
CDX84297	Canola	plastid	47.06	21.82
GSMUA_Achr6P31220_001	Banana	plastid	28.1	19.11
Zm00001d047442_P001	Maize	plastid	22.88	11.74
Zm00001d050886_P001	Maize	mitochondrion	20.26	11.11
Zm00001d029242_P001	Maize	plastid	21.57	10.89
Zm00001d049743_P001	Maize	cytosol, mitochondrion, nucleus	15.69	7.19
Zm00001d052081_P003	Maize	mitochondrion	22.22	6.95
Zm00001d010340_P001	Maize	plastid	21.57	6.68
Zm00001d017130_P001	Maize	plastid	19.61	6.17
Zm00001d018756_P001	Maize	plastid	22.88	5.72
Zm00001d006700_P003	Maize	mitochondrion, plastid	18.3	4.86
Zm00001d027230_P001	Maize	plastid	16.34	4.08
Zm00001d021376_P001	Maize	cytosol	16.34	3.89

Protein Annotations

Gene3D:1.25.70.10	MapMan:15.6.2.2	UniProt:A0A1D6G1G4	ProteinID:AQK97266.1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003690	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR038538	InterPro:MTERF	InterPro:MTERF_sf
PFAM:PF02536	PANTHER:PTHR13068	PANTHER:PTHR13068:SF78	SMART:SM00733	UniParc:UPI00084384C6	EnsemblPlantsGene:Zm00001d011574
EnsemblPlants:Zm00001d011574_P001	EnsemblPlants:Zm00001d011574_T001	SEG:seg	:	:	:

Description

Mitochondrial transcription termination factor family protein

Coordinates

chr8:-:154819735..154822032

Molecular Weight (calculated)

16732.8 Da

IEP (calculated)

9.466

GRAVY (calculated)

0.381

Length

153 amino acids

Sequence
(BLAST)

001: MRSAATVTPA VATTSLALSL HLPELPSQVK DKILSLELMG VDYGRALEQS PALRDAAPES IHAVVSFLQS RGLQFKDLGR VFGMCTSVLT ANVRADLCPV
101: FAFLSADLGV PESAHWRVVI KCPRVLACSV RDQLRPALIY LRRLGFRLCM LIK

Best Arabidopsis Sequence Match ( AT2G34620.1 )
(BLAST)

001: MSAALSSSLY ISPKKPSCPQ QSQSTFLSTK PTTIKTNLHS HPLFTVADQT VTLQMKEKIL CLELMGIDSG KALSLNPCLC SAPLDSIQSV LHFLQSKGIY
101: PNDLPRILGM CPKILTSDVR TELYPVFMFL SNDLHVPENA FRRVIKKCPR LLISSVEDQL KPALFYLQRL GLKDLEALAY QDPILLVSSV EHTLIPKLRF
201: LESIGFSRPE AIGMILRCPA LFTFSIENNF KPKLDYFMSE IKGKLENLKE FPQYFAFSLE KRIKPRHLES MERGLELPLS LMLKSTDEEF EQLLTNPSSV
301: ANV

Arabidopsis Description

Mitochondrial transcription termination factor family protein [Source:UniProtKB/TrEMBL;Acc:O64685]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.