CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH12828	Soybean	plastid	89.44	95.36
Solyc02g021430.1.1	Tomato	plastid	56.83	59.8
AT2G34620.1	Thale cress	plastid	56.21	59.74
VIT_10s0003g04040.t01	Wine grape	plastid	64.29	58.81
PGSC0003DMT400080487	Potato	plastid	56.21	58.39
CDX84297	Canola	plastid	57.45	56.06
GSMUA_Achr6P31220_001	Banana	plastid	36.02	51.56
Zm00001d011574_P001	Maize	cytosol, extracellular, plastid	23.6	49.67
OQU90879	Sorghum	plastid	47.52	47.96
Os03t0785200-01	Rice	plastid	45.65	47.42
TraesCS5A01G423600.1	Wheat	plastid	45.34	45.62
TraesCS5B01G425900.1	Wheat	plastid	45.65	44.82
TraesCS5D01G432100.1	Wheat	plastid	44.72	44.04
KRH74890	Soybean	cytosol, plasma membrane, plastid	33.85	41.13
KRH70749	Soybean	plastid	35.4	38.64
KRH40190	Soybean	cytosol	13.04	38.18
KRH13722	Soybean	plastid	32.92	31.18
KRH43735	Soybean	plastid	31.99	30.47
KRH01028	Soybean	plastid	25.47	29.93
KRH39012	Soybean	cytosol	24.84	17.9
KRH32500	Soybean	cytosol	18.32	17.61
KRH19886	Soybean	cytosol	18.01	17.31
KRH57654	Soybean	mitochondrion, plastid	25.78	17.29
KRG94311	Soybean	plastid	24.84	16.91
KRH60420	Soybean	cytosol	19.25	15.2
KRH41721	Soybean	mitochondrion	22.36	14.43
KRH73870	Soybean	plastid	21.74	14.29
KRH14270	Soybean	plastid	21.74	14.08
KRH24469	Soybean	plastid	25.78	13.3
KRH64303	Soybean	nucleus	19.88	12.85
KRH72610	Soybean	plastid	20.5	12.74
KRH09594	Soybean	cytosol	22.05	11.99
KRH29455	Soybean	mitochondrion	19.88	11.27

Protein Annotations

Gene3D:1.25.70.10	EntrezGene:100788221	MapMan:15.6.2.2	EMBL:ACUP02005512	EnsemblPlantsGene:GLYMA_09G089600	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003690	GO:GO:0003723	GO:GO:0003727	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0008380	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536
GO:GO:0009658	GO:GO:0009987	GO:GO:0016043	GO:GO:0019843	GO:GO:0032502	GO:GO:0042255
UniProt:I1L267	InterPro:IPR038538	EnsemblPlants:KRH37793	ProteinID:KRH37793	ProteinID:KRH37793.1	InterPro:MTERF
InterPro:MTERF_sf	PFAM:PF02536	PANTHER:PTHR13068	PANTHER:PTHR13068:SF78	SMART:SM00733	UniParc:UPI00023CA94B
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:-:11940702..11942096

Molecular Weight (calculated)

35924.1 Da

IEP (calculated)

9.001

GRAVY (calculated)

-0.074

Length

322 amino acids

Sequence
(BLAST)

001: MPSLSLSTLT HSLSHPLSTT MPPAAGAIAL HSSLCTISSD KPSSPLRSPS IHVSPKPKSL LQNHPLYTPT HTKLSLEFKE KILCLEVMGV DAGKALSQNP
101: DLRTATMESI HSIISFLLSK GLQEKDLPRI FGMCPKILTS DIKTDLNPVF DFILSELKVP ENSFRRVVNK CPRLLTSSVK DQLRPCLVYL RRLGFKDLGA
201: LAYQDSVLLV SNVENTLIPK LKFLETLGLS KDEVRSMVLR CPALLTFSIE NNFQPKYEFF AGEMGRKLEE LKEFPQYFAF SLENRIKPRH MEVVQSGIAL
301: ALPVMLKSTD EEFRELVKQG GG

Best Arabidopsis Sequence Match ( AT2G34620.1 )
(BLAST)

001: MSAALSSSLY ISPKKPSCPQ QSQSTFLSTK PTTIKTNLHS HPLFTVADQT VTLQMKEKIL CLELMGIDSG KALSLNPCLC SAPLDSIQSV LHFLQSKGIY
101: PNDLPRILGM CPKILTSDVR TELYPVFMFL SNDLHVPENA FRRVIKKCPR LLISSVEDQL KPALFYLQRL GLKDLEALAY QDPILLVSSV EHTLIPKLRF
201: LESIGFSRPE AIGMILRCPA LFTFSIENNF KPKLDYFMSE IKGKLENLKE FPQYFAFSLE KRIKPRHLES MERGLELPLS LMLKSTDEEF EQLLTNPSSV
301: ANV

Arabidopsis Description

Mitochondrial transcription termination factor family protein [Source:UniProtKB/TrEMBL;Acc:O64685]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.