CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_07s0104g00720.t01	Wine grape	mitochondrion	73.17	72.19
PGSC0003DMT400007420	Potato	mitochondrion	65.44	71.07
Solyc04g005630.2.1	Tomato	nucleus	68.34	65.56
AT4G02990.1	Thale cress	plastid	68.15	65.25
CDY21931	Canola	golgi, mitochondrion, plastid	65.83	64.46
Bra036228.1-P	Field mustard	golgi, mitochondrion, plastid	65.44	63.84
CDY22091	Canola	golgi, mitochondrion, plastid	65.44	63.84
TraesCS1A01G252300.1	Wheat	cytosol	47.49	62.12
TraesCS1B01G265700.1	Wheat	cytosol	51.54	61.66
TraesCS2A01G284000.1	Wheat	cytosol	15.64	60.0
OQU77962	Sorghum	plastid	56.37	58.63
Zm00001d010340_P001	Maize	plastid	55.79	58.5
HORVU1Hr1G061210.8	Barley	plastid	55.41	57.75
TraesCS1D01G252000.1	Wheat	plastid	55.41	57.4
GSMUA_Achr3P24870_001	Banana	cytosol, mitochondrion, plastid	43.05	57.18
Os05t0404000-01	Rice	plastid	55.98	57.09
KRH60420	Soybean	cytosol	37.84	48.04
KRH41721	Soybean	mitochondrion	44.4	46.09
KRH40190	Soybean	cytosol	5.98	28.18
KRH32500	Soybean	cytosol	14.86	22.99
KRH19886	Soybean	cytosol	14.86	22.99
KRH74890	Soybean	cytosol, plasma membrane, plastid	11.58	22.64
KRH01028	Soybean	plastid	11.58	21.9
KRH70749	Soybean	plastid	12.36	21.69
KRH12828	Soybean	plastid	12.55	21.52
KRH13722	Soybean	plastid	13.51	20.59
KRH37793	Soybean	plastid	12.74	20.5
KRH43735	Soybean	plastid	13.13	20.12
KRH73870	Soybean	plastid	15.83	16.73
KRH14270	Soybean	plastid	16.02	16.7
KRH39012	Soybean	cytosol	14.29	16.55
KRH57654	Soybean	mitochondrion, plastid	15.06	16.25
KRH24469	Soybean	plastid	19.3	16.03
KRG94311	Soybean	plastid	14.48	15.86
KRH64303	Soybean	nucleus	14.86	15.46
KRH09594	Soybean	cytosol	17.57	15.37
KRH29455	Soybean	mitochondrion	14.48	13.2

Protein Annotations

Gene3D:1.25.70.10	EntrezGene:100785223	MapMan:15.6.2.2	MapMan:16.12.2.1.1.6	EMBL:ACUP02001223	EnsemblPlantsGene:GLYMA_02G223000
GO:GO:0000003	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003690	GO:GO:0003723
GO:GO:0003727	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006139	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008380
GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009658	GO:GO:0009790	GO:GO:0009791
GO:GO:0009793	GO:GO:0009987	GO:GO:0016043	GO:GO:0019843	GO:GO:0032502	GO:GO:0042255
GO:GO:0042793	GO:GO:0042794	UniProt:I1JH93	InterPro:IPR038538	EnsemblPlants:KRH72610	ProteinID:KRH72610
ProteinID:KRH72610.1	ProteinID:KRH72611.1	ProteinID:KRH72612.1	InterPro:MTERF	InterPro:MTERF_sf	PFAM:PF02536
PANTHER:PTHR13068	PANTHER:PTHR13068:SF24	SMART:SM00733	UniParc:UPI0001CAB3D2	SEG:seg	:

Description

hypothetical protein

Coordinates

chr2:+:41075606..41080676

Molecular Weight (calculated)

58715.8 Da

IEP (calculated)

6.683

GRAVY (calculated)

-0.140

Length

518 amino acids

Sequence
(BLAST)

001: MKVISFSGGI TKPCFFIAQT EMPILTFAHC KLSATLALRR MGSITRLQYS VADRTFTSGS VDLPASKTDS GRVNRRRGGG SSSVYSRPSL SEMKKEKAAI
101: REKVYEFLRA IGIVPDELDG LELPVTVDVM RERVDFLHSL GLTIEDINNY PLVLGCSVKK NMIPVLDYLG KLGVRKSSIT QFLQRYPQVL HASVVVDLMP
201: VVNYLKGMDI KFDDVPRVLE RYPEVLGFKL EGTMSTSVAY LIGIGVGRRE IGGVLTRYPE ILGMRVGRVI KPFVEYLESL GIPRLAIARL IEQRPYILGF
301: GLGEKVKPNV KYLEEYNVRR TSLPSIIAQY PDIIGTDLNQ KLEKQRSLLN SVLDLDPEDF GRVVEKMPQV VNLSSGPMLK HVDFLKNCGF SLPQMRQMVV
401: GCPQLLALNI DIMKLSFDYF QMVMKRPLED LVTFPAFFTY GLESTIKPRH KMVVKKGLKC SLSWMLNCSN EKFEQRMDYD TIDMEEMEME PSFDMNSLTQ
501: PRSDESDFDY EDSDEDDE

Best Arabidopsis Sequence Match ( AT4G02990.1 )
(BLAST)

001: MKIRFCNGFT KPGFLLVHFE PPSFFAVRSR SLSDSTYGNL CNHKKRPGTG IGLTVQCAIA NRRFSSRSLD SPRRERSSRS SSSSGRDRDR DKDKGRDSKS
101: LYSRPSLLDM NKEKAANRAK VYEFLRGIGI VPDELDGLEL PVTADVMKER VEFLHKLGLT IEDINNYPLV LGCSVKKNMV PVLDYLGKLG VRKSTFTEFL
201: RRYPQVLHSS VVIDLAPVVK YLQGLDIKPS DVPRVLERYP EVLGFKLEGT MSTSVAYLVG IGVARREIGG ILTRYPEILG MRVARIIKPL VEYLEVLGIP
301: RLAAARLIEK RPHILGFELD DTVKPNVQIL QDFNVRETSL PSIIAQYPEI IGIDLKPKLD TQRKLLCSAI HLNPEDLGSL IERMPQFVSL SESPMLKHID
401: FLTKCGFSID QTREMVIGCP QVLALNLGIM KLSFEYFQKE MKRPLQDLVD FPAFFTYGLE STVKPRHKKI IKKGIKCSLA WMLNCSDEKF EQRMSYDTID
501: IEEVETDPSS FDMNTLMQPE REEESDSEYE EEEDDDDEEF A

Arabidopsis Description

MTERF4Transcription termination factor MTERF4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9ZT96]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.