Factsheet for TraesCS1A01G252300.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G265700.1	Wheat	cytosol	99.24	90.76
TraesCS2A01G284000.1	Wheat	cytosol	27.53	80.74
TraesCS1D01G252000.1	Wheat	plastid	99.49	78.8
HORVU1Hr1G061210.8	Barley	plastid	97.22	77.46
OQU77962	Sorghum	plastid	85.61	68.07
Os05t0404000-01	Rice	plastid	87.12	67.91
Zm00001d010340_P001	Maize	plastid	83.84	67.21
PGSC0003DMT400007420	Potato	mitochondrion	65.15	54.09
VIT_07s0104g00720.t01	Wine grape	mitochondrion	65.66	49.52
KRH72610	Soybean	plastid	62.12	47.49
Solyc04g005630.2.1	Tomato	nucleus	64.65	47.41
CDY22091	Canola	golgi, mitochondrion, plastid	60.1	44.82
Bra036228.1-P	Field mustard	golgi, mitochondrion, plastid	60.1	44.82
CDY21931	Canola	golgi, mitochondrion, plastid	59.85	44.8
AT4G02990.1	Thale cress	plastid	60.35	44.18
GSMUA_Achr3P24870_001	Banana	cytosol, mitochondrion, plastid	42.93	43.59
TraesCS6A01G343900.1	Wheat	plastid	49.49	36.3
TraesCS7A01G250000.3	Wheat	cytosol	18.43	21.92
TraesCS5A01G423600.1	Wheat	plastid	16.41	20.31
TraesCS1A01G084300.1	Wheat	mitochondrion	15.66	19.75
TraesCS6A01G201500.1	Wheat	extracellular, mitochondrion, plastid	12.88	18.21
TraesCS2A01G255200.1	Wheat	cytosol	21.21	18.14
TraesCS2A01G189200.1	Wheat	plastid	18.43	14.63
TraesCS6A01G214200.1	Wheat	plastid	16.67	13.64
TraesCS5A01G363600.1	Wheat	plastid	15.91	11.01

Protein Annotations

Gene3D:1.25.70.10	MapMan:15.6.2.2	MapMan:16.12.2.1.1.6	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003690	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR038538	InterPro:MTERF	InterPro:MTERF_sf	PFAM:PF02536
PANTHER:PTHR13068	PANTHER:PTHR13068:SF24	SMART:SM00733	EnsemblPlantsGene:TraesCS1A01G252300	EnsemblPlants:TraesCS1A01G252300.1	SEG:seg

Description

No Description!

Coordinates

chr1A:+:444121906..444123836

Molecular Weight (calculated)

44980.7 Da

IEP (calculated)

4.602

GRAVY (calculated)

-0.090

Length

396 amino acids

Sequence
(BLAST)

001: MRERVEFLRS LGLGPDDLAA YPLALGCSVR KNMVPVLDYL GKIGVRRDEL PHLLRRYPQV LHASIVVDLA PVVKYLQGMD VKPGDVPRVL ERYPELLGFK
101: LEGTMSTSVA YLVGIGVARR QIGGVITRFP EVLGMRVGKI IKPFVEHLQG IGLQRLAVAR MIEKKPYVLG FGLEERVKPN IEALLEFGVR KEALASIVIQ
201: YPDVLGVELR EKLVEQQSLF ESSILVSGDD FGRVVERMPQ AISLGRAAVL KHVNFLTGCG FLLSQVSKMV VGCPQLLALN MDIMKMNFEY FKNEMERDLE
301: ELVEFPAFFT YGLESTIRYR HEIVAKKGFT CSLAWLLNCS DAKFDERMKY DTIGVEEMED DNSFDKDRFV EQVQDEDDED MEEDSDYDET DDEFIE

Best Arabidopsis Sequence Match ( AT4G02990.1 )
(BLAST)

001: MKIRFCNGFT KPGFLLVHFE PPSFFAVRSR SLSDSTYGNL CNHKKRPGTG IGLTVQCAIA NRRFSSRSLD SPRRERSSRS SSSSGRDRDR DKDKGRDSKS
101: LYSRPSLLDM NKEKAANRAK VYEFLRGIGI VPDELDGLEL PVTADVMKER VEFLHKLGLT IEDINNYPLV LGCSVKKNMV PVLDYLGKLG VRKSTFTEFL
201: RRYPQVLHSS VVIDLAPVVK YLQGLDIKPS DVPRVLERYP EVLGFKLEGT MSTSVAYLVG IGVARREIGG ILTRYPEILG MRVARIIKPL VEYLEVLGIP
301: RLAAARLIEK RPHILGFELD DTVKPNVQIL QDFNVRETSL PSIIAQYPEI IGIDLKPKLD TQRKLLCSAI HLNPEDLGSL IERMPQFVSL SESPMLKHID
401: FLTKCGFSID QTREMVIGCP QVLALNLGIM KLSFEYFQKE MKRPLQDLVD FPAFFTYGLE STVKPRHKKI IKKGIKCSLA WMLNCSDEKF EQRMSYDTID
501: IEEVETDPSS FDMNTLMQPE REEESDSEYE EEEDDDDEEF A

Arabidopsis Description

MTERF4Transcription termination factor MTERF4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9ZT96]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.