Factsheet for GSMUA_Achr3P24870_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, cytosol

Predictor Summary:

plastid 3
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G284000.1	Wheat	cytosol	19.74	57.04
PGSC0003DMT400007420	Potato	mitochondrion	55.9	45.7
VIT_07s0104g00720.t01	Wine grape	mitochondrion	61.03	45.33
TraesCS1B01G265700.1	Wheat	cytosol	50.26	45.27
OQU77962	Sorghum	plastid	56.15	43.98
HORVU1Hr1G061210.8	Barley	plastid	54.87	43.06
KRH72610	Soybean	plastid	57.18	43.05
Solyc04g005630.2.1	Tomato	nucleus	59.49	42.96
TraesCS1A01G252300.1	Wheat	cytosol	43.59	42.93
TraesCS1D01G252000.1	Wheat	plastid	54.87	42.8
Zm00001d010340_P001	Maize	plastid	54.1	42.71
Os05t0404000-01	Rice	plastid	55.13	42.32
AT4G02990.1	Thale cress	plastid	58.46	42.14
Bra036228.1-P	Field mustard	golgi, mitochondrion, plastid	56.92	41.81
CDY22091	Canola	golgi, mitochondrion, plastid	56.92	41.81
CDY21931	Canola	golgi, mitochondrion, plastid	56.41	41.59
GSMUA_Achr10P...	Banana	mitochondrion	21.28	22.37
GSMUA_Achr2P08550_001	Banana	plastid	9.23	13.14
GSMUA_AchrUn_...	Banana	cytosol	11.03	12.99
GSMUA_Achr7P20690_001	Banana	cytosol	7.18	12.67
GSMUA_Achr5P23270_001	Banana	mitochondrion	9.23	11.65
GSMUA_Achr6P02570_001	Banana	plastid	6.92	11.2
GSMUA_Achr3P02690_001	Banana	plastid	14.87	11.2
GSMUA_AchrUn_...	Banana	plastid	9.49	10.98
GSMUA_Achr4P23060_001	Banana	mitochondrion	18.46	10.32
GSMUA_Achr6P31220_001	Banana	plastid	5.9	10.22
GSMUA_Achr3P29890_001	Banana	plastid	12.05	9.27
GSMUA_Achr3P27780_001	Banana	plastid	14.1	9.02

Protein Annotations

Gene3D:1.25.70.10	MapMan:15.6.2.2	GO:GO:0000003	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003690	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006139	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008380
GO:GO:0009058	GO:GO:0009536	GO:GO:0009790	GO:GO:0009791	GO:GO:0009793	GO:GO:0009987
GO:GO:0032502	GO:GO:0042793	GO:GO:0042794	EnsemblPlantsGene:GSMUA_Achr3G24870_001	EnsemblPlants:GSMUA_Achr3P24870_001	EnsemblPlants:GSMUA_Achr3T24870_001
InterPro:IPR038538	UniProt:M0SHK3	InterPro:MTERF	InterPro:MTERF_sf	PFAM:PF02536	PANTHER:PTHR13068
PANTHER:PTHR13068:SF24	SMART:SM00733	UniParc:UPI000294DB69	SEG:seg	:	:

Description

Whole genome shotgun sequence of line PN40024, scaffold_104.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr3G24870_001]

Coordinates

chr3:+:25269324..25271299

Molecular Weight (calculated)

43246.2 Da

IEP (calculated)

9.986

GRAVY (calculated)

-0.005

Length

390 amino acids

Sequence
(BLAST)

001: MQLAFVARYL IQTTLSPPIP ISSHLIPETM KVQVLGRPGG HLLFSHPKSP IVCLAHQHPL VKNPIFDPEK PYRRRTHASC SAAPLATSAA PSRRAADVPG
101: RPSPSSLYSR PSLQQMKAER AANRARVYEF LRSLGVVPDE LDGLELPVTV DVMHERVEFL QSLGLTVDDI NSYPLVLGCS VKKNIVPVLD YLGKLGVRKA
201: TFTEFLRRYP QVLHSSVVVD LMPVVKYLQG LDIRPNDIPR VLEKYPEVLG FKLEGTMSTS VAYLVGIGVA RREIGGVLTR YPEILGMRVG KVIKPFVEYL
301: ESIGLPRLAV ARLIEKRPRI LGFSLEEQVK PNVEALLEFG VRQEAAASVI AQYPDIMGLE LKAKLTSQQS LFESNILNGR RVPPIARTES

Best Arabidopsis Sequence Match ( AT4G02990.1 )
(BLAST)

001: MKIRFCNGFT KPGFLLVHFE PPSFFAVRSR SLSDSTYGNL CNHKKRPGTG IGLTVQCAIA NRRFSSRSLD SPRRERSSRS SSSSGRDRDR DKDKGRDSKS
101: LYSRPSLLDM NKEKAANRAK VYEFLRGIGI VPDELDGLEL PVTADVMKER VEFLHKLGLT IEDINNYPLV LGCSVKKNMV PVLDYLGKLG VRKSTFTEFL
201: RRYPQVLHSS VVIDLAPVVK YLQGLDIKPS DVPRVLERYP EVLGFKLEGT MSTSVAYLVG IGVARREIGG ILTRYPEILG MRVARIIKPL VEYLEVLGIP
301: RLAAARLIEK RPHILGFELD DTVKPNVQIL QDFNVRETSL PSIIAQYPEI IGIDLKPKLD TQRKLLCSAI HLNPEDLGSL IERMPQFVSL SESPMLKHID
401: FLTKCGFSID QTREMVIGCP QVLALNLGIM KLSFEYFQKE MKRPLQDLVD FPAFFTYGLE STVKPRHKKI IKKGIKCSLA WMLNCSDEKF EQRMSYDTID
501: IEEVETDPSS FDMNTLMQPE REEESDSEYE EEEDDDDEEF A

Arabidopsis Description

MTERF4Transcription termination factor MTERF4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9ZT96]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.