Factsheet for GSMUA_Achr3P27780_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU5Hr1G089290.3	Barley	cytosol	50.98	58.02
TraesCS5B01G365700.1	Wheat	plastid	53.11	55.38
TraesCS5D01G372800.1	Wheat	plastid	52.79	55.04
Os09t0560100-00	Rice	plasma membrane, plastid	54.75	54.58
Zm00001d027230_P001	Maize	plastid	54.1	53.83
OQU89932	Sorghum	plastid	53.61	53.69
TraesCS5A01G363600.1	Wheat	plastid	50.33	53.67
VIT_09s0054g01030.t01	Wine grape	plastid	51.97	52.75
Zm00001d021376_P001	Maize	cytosol	54.1	51.4
PGSC0003DMT400023772	Potato	plastid	49.67	50.75
Solyc03g124040.2.1	Tomato	golgi, plastid	47.05	50.0
HORVU0Hr1G013680.1	Barley	mitochondrion	18.85	49.57
AT1G78930.1	Thale cress	plastid	44.59	46.02
KRH09594	Soybean	cytosol	44.43	45.78
GSMUA_AchrUn_...	Banana	cytosol	13.44	24.77
GSMUA_Achr5P23270_001	Banana	mitochondrion	12.13	23.95
GSMUA_Achr2P08550_001	Banana	plastid	9.84	21.9
GSMUA_AchrUn_...	Banana	plastid	11.64	21.07
GSMUA_Achr6P31220_001	Banana	plastid	7.54	20.44
GSMUA_Achr7P20690_001	Banana	cytosol	7.21	19.91
GSMUA_Achr3P02690_001	Banana	plastid	15.9	18.73
GSMUA_Achr6P02570_001	Banana	plastid	7.38	18.67
GSMUA_Achr3P29890_001	Banana	plastid	13.77	16.57
GSMUA_Achr10P...	Banana	mitochondrion	9.84	16.17
GSMUA_Achr3P24870_001	Banana	cytosol, mitochondrion, plastid	9.02	14.1
GSMUA_Achr4P23060_001	Banana	mitochondrion	15.74	13.75

Protein Annotations

Gene3D:1.25.70.10	MapMan:15.6.2.2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003690
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536
GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr3G27780_001	EnsemblPlants:GSMUA_Achr3P27780_001	EnsemblPlants:GSMUA_Achr3T27780_001	InterPro:IPR038538	UniProt:M0SIE4
InterPro:MTERF	InterPro:MTERF_sf	PFAM:PF02536	PANTHER:PTHR13068	PANTHER:PTHR13068:SF42	SMART:SM00733
UniParc:UPI0002962E7A	SEG:seg	:	:	:	:

Description

mTERF domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr3G27780_001]

Coordinates

chr3:+:27269561..27275203

Molecular Weight (calculated)

68843.5 Da

IEP (calculated)

8.750

GRAVY (calculated)

0.022

Length

610 amino acids

Sequence
(BLAST)

001: MASWALPAPT TVVPTLSPSI DRPRSWNVAF VLFLGSNSPS PFVSSVSTSS VRSCGFRATR VRFAAAEDGW CPSSTSGLPA VDEAREAVVE ILREFGASQE
101: DSVYIAANSP CYVEMLVGNV QELDELGLWG SWNSEIVEEN MDMSSLSFRK KVYYMAKSKG DKGVLPYLES IGVKLSSALL IARYLSSEKL RQLIDKVNFV
201: SGILFPSSIN KALIGRNARR MMMYLSIPVD EDVQSTLSFF EKMEARHGGL SMLGHKDASF PYLVESFPKL LLCSVEDHFK PLVGFLELLG VPEAGIATIL
301: LSFPPIIFCD IEKEIKPKLC AFSKGFEEKD IAKMLMKYPW ILSTSIQENY EKILAFFNEK KVPKSSVDLA IRSWPHILGC SATKMKSMVE QFNEFGVKKK
401: MLVPVITSSP QLLLKKPKEF QEVVSFMEEI GFDSKTIGRI LCRCPEIFAS SVDNTLRKKV NFLADFGVSR DCLLRVVRKY PEMLLLDTDN TLLPRMIFLM
501: RVGLSKREVC SMICRFSPIL GYSIEMVLKP KLDFLLRTMK KPLKEIVEYP RYFSYSLDKK IKPRFWVIHS RKLECSLKDM LSKNDDEFAQ EYMGIGRFLV
601: VPSVPPKDGS

Best Arabidopsis Sequence Match ( AT1G78930.1 )
(BLAST)

001: MELLHTSCNF ETLTLISPPL KSCNFSSSSL FFSPRRVTLF PAYHSGRVTV SASLQHGDSN FSSNSSQTNQ EAQNSIAGFL RRDTGLSEAD SDFISSNCPK
101: YTRMIVEGVR DLEEWNSWKG SGESERVEEG LGFKEKVIYM VKQKGDGGKV AFLESLGLSL SSAMYLAHYV SSESLPILLD KVKYLKEIFF SGSDEKGLVG
201: KYARRMMLYL SIPIDEDVQQ TLSFFEKIEA RRGGLDMLGS VDASFRFLLE SFPRLLLLSE ENDMKPMVEF LESIGIPKYC LGKVLLLYPP IMLGKTEEIK
301: RRVATAMEKV SVVNKDSGKL LLKYPWILSP SIQENYSHIG SFFYSESVLK MDIDHAIRRW PLLLGCSASN MEMMVKEFDK LGVRDKRMGK VIPKMPQLLL
401: CKPQEFLKVV CFLEDLGFQK EIVGQILCRC PEIFGCSIEK TLQKKLIFLT RFGVSTTHFP RIIKKYPEFL IYDADKTVLP RLKYLMEIGI SEREIAFMIR
501: KFSPILGYSI DKVLRPKFEF LVNSMEKPVR EVIEYPRYFS YSLEKRIKPR FRVLKGRNIE CTLQEMLGKN DEEFAADFLG LGELQTHSEI S

Arabidopsis Description

Mitochondrial transcription termination factor family protein [Source:UniProtKB/TrEMBL;Acc:Q0WRV2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.