Factsheet for VIT_09s0054g01030.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400023772	Potato	plastid	56.74	57.12
Solyc03g124040.2.1	Tomato	golgi, plastid	53.41	55.92
AT1G78930.1	Thale cress	plastid	52.58	53.47
KRH09594	Soybean	cytosol	51.91	52.7
GSMUA_Achr3P27780_001	Banana	plastid	52.75	51.97
HORVU5Hr1G089290.3	Barley	cytosol	45.59	51.12
TraesCS5D01G372800.1	Wheat	plastid	46.76	48.03
TraesCS5B01G365700.1	Wheat	plastid	46.26	47.52
OQU89932	Sorghum	plastid	46.42	45.81
Os09t0560100-00	Rice	plasma membrane, plastid	46.26	45.42
TraesCS5A01G363600.1	Wheat	plastid	42.93	45.1
Zm00001d027230_P001	Maize	plastid	45.92	45.02
HORVU0Hr1G013680.1	Barley	mitochondrion	16.97	43.97
Zm00001d021376_P001	Maize	cytosol	45.09	42.21
VIT_03s0038g04180.t01	Wine grape	cytosol, plastid	15.47	26.27
VIT_03s0063g02460.t01	Wine grape	plastid	11.81	25.72
VIT_01s0010g03740.t01	Wine grape	plastid	12.15	23.32
VIT_08s0007g02500.t01	Wine grape	plastid	12.98	23.08
VIT_10s0003g04040.t01	Wine grape	plastid	12.98	22.16
VIT_03s0063g02590.t01	Wine grape	cytosol	18.64	19.68
VIT_14s0171g00230.t01	Wine grape	plastid	15.97	19.39
VIT_11s0016g02240.t01	Wine grape	mitochondrion	14.81	18.5
VIT_07s0104g00720.t01	Wine grape	mitochondrion	15.64	17.9
VIT_19s0090g01770.t01	Wine grape	plastid	13.31	15.9
VIT_16s0098g00970.t01	Wine grape	plastid	13.64	4.06

Protein Annotations

Gene3D:1.25.70.10	EntrezGene:100244378	wikigene:100244378	MapMan:15.6.2.2	ProteinID:CCB45045	ProteinID:CCB45045.1
UniProt:F6GYK9	EMBL:FN594972	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003690
GO:GO:0003723	GO:GO:0003727	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0008380
GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009658	GO:GO:0009987	GO:GO:0016043
GO:GO:0019843	GO:GO:0032502	GO:GO:0042255	InterPro:IPR038538	EntrezGene:LOC100244378	wikigene:LOC100244378
InterPro:MTERF	InterPro:MTERF_sf	PFAM:PF02536	PANTHER:PTHR13068	PANTHER:PTHR13068:SF42	SMART:SM00733
UniParc:UPI00015CA546	ArrayExpress:VIT_09s0054g01030	EnsemblPlantsGene:VIT_09s0054g01030	EnsemblPlants:VIT_09s0054g01030.t01	RefSeq:XP_002267835	RefSeq:XP_002267835.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr9:-:21891991..21897453

Molecular Weight (calculated)

69039.7 Da

IEP (calculated)

7.622

GRAVY (calculated)

-0.314

Length

601 amino acids

Sequence
(BLAST)

001: MFSKLLPIPR NFTTPSPSPT FPPLPNLPFH LKPFPHKFPS ITQLSFPHYP HLPQASPSWN QQQEDEDEDE DEEEGQARAA VSEILRESGV SEEESVEIAL
101: NSPKYVKMLV DGVRDLEEWN AWKKGAEEAE SFKEKVYRLA REKGDYGRLA FLESIGLSLS SALSVARYLS SESLPGLIEK VRFVKQMFFS EGNDEGFLGK
201: NARRMMMYLS IPIDEDLQQT LSFFEKIEAR RGGLDILCSK DASFGYLVES FPRLLLLSVE SHLKPMMKFL EDIGVQRGSM RNVLLLYPPI IFYDIEKDIK
301: PRLLAFEKIG AADKDLGRML VKYPWIISTS IQENYEEILS FFYREKVPKS SVDSGIKSWP HLLGCSTSKL KLIVEQFGEL DVRNKKLGQI IATSPQLLLQ
401: KPNEFLEVVS FLEELGFDRE TVGRILGRCP EIFAANIEKT LKKKLEFLAS IGIFKDHLPR VIRKYPELFV SDINRTLLPR TKYLRKTGFS KRDIAFMIRR
501: FSPLLGYSVE EVLRPKLEFL VKTMEKPVKE VVDYPRYFSY SLEKKIKPRF WVLKVRNVDC SLKDMLAKND EEFAAEFMDV GRTPVPSPHT SPPTSPPISP
601: H

Best Arabidopsis Sequence Match ( AT1G78930.1 )
(BLAST)

001: MELLHTSCNF ETLTLISPPL KSCNFSSSSL FFSPRRVTLF PAYHSGRVTV SASLQHGDSN FSSNSSQTNQ EAQNSIAGFL RRDTGLSEAD SDFISSNCPK
101: YTRMIVEGVR DLEEWNSWKG SGESERVEEG LGFKEKVIYM VKQKGDGGKV AFLESLGLSL SSAMYLAHYV SSESLPILLD KVKYLKEIFF SGSDEKGLVG
201: KYARRMMLYL SIPIDEDVQQ TLSFFEKIEA RRGGLDMLGS VDASFRFLLE SFPRLLLLSE ENDMKPMVEF LESIGIPKYC LGKVLLLYPP IMLGKTEEIK
301: RRVATAMEKV SVVNKDSGKL LLKYPWILSP SIQENYSHIG SFFYSESVLK MDIDHAIRRW PLLLGCSASN MEMMVKEFDK LGVRDKRMGK VIPKMPQLLL
401: CKPQEFLKVV CFLEDLGFQK EIVGQILCRC PEIFGCSIEK TLQKKLIFLT RFGVSTTHFP RIIKKYPEFL IYDADKTVLP RLKYLMEIGI SEREIAFMIR
501: KFSPILGYSI DKVLRPKFEF LVNSMEKPVR EVIEYPRYFS YSLEKRIKPR FRVLKGRNIE CTLQEMLGKN DEEFAADFLG LGELQTHSEI S

Arabidopsis Description

Mitochondrial transcription termination factor family protein [Source:UniProtKB/TrEMBL;Acc:Q0WRV2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.