Factsheet for VIT_01s0010g03740.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400047490	Potato	mitochondrion	24.28	80.85
PGSC0003DMT400047424	Potato	plastid	64.54	63.52
Solyc05g007840.2.1	Tomato	plastid	63.9	60.98
KRH74890	Soybean	cytosol, plasma membrane, plastid	50.8	60.0
Bra024793.1-P	Field mustard	extracellular	52.08	57.39
CDY03022	Canola	extracellular	52.08	57.39
AT2G03050.2	Thale cress	cytosol, golgi, mitochondrion, plastid	52.08	57.39
CDY45184	Canola	extracellular, mitochondrion	52.08	57.19
KRH70749	Soybean	plastid	52.08	55.25
GSMUA_Achr5P23270_001	Banana	mitochondrion	50.48	51.13
GSMUA_Achr6P02570_001	Banana	plastid	34.5	44.81
VIT_10s0003g04040.t01	Wine grape	plastid	41.21	36.65
VIT_03s0063g02460.t01	Wine grape	plastid	30.99	35.14
VIT_08s0007g02500.t01	Wine grape	plastid	34.5	31.95
VIT_14s0171g00230.t01	Wine grape	plastid	27.48	17.37
VIT_03s0038g04180.t01	Wine grape	cytosol, plastid	17.89	15.82
VIT_03s0063g02590.t01	Wine grape	cytosol	24.28	13.36
VIT_11s0016g02240.t01	Wine grape	mitochondrion	20.13	13.1
VIT_19s0090g01770.t01	Wine grape	plastid	20.13	12.52
VIT_07s0104g00720.t01	Wine grape	mitochondrion	20.45	12.19
VIT_09s0054g01030.t01	Wine grape	plastid	23.32	12.15
VIT_16s0098g00970.t01	Wine grape	plastid	20.45	3.17

Protein Annotations

Gene3D:1.25.70.10	EntrezGene:100247222	wikigene:100247222	MapMan:15.6.2.2	EMBL:AM477084	ProteinID:CAN77430
ProteinID:CAN77430.1	ProteinID:CCB51306	ProteinID:CCB51306.1	UniProt:F6HGB3	EMBL:FN595754	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003690	GO:GO:0003723	GO:GO:0003727	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0008380	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536
GO:GO:0009658	GO:GO:0009987	GO:GO:0016043	GO:GO:0019843	GO:GO:0032502	GO:GO:0042255
InterPro:IPR038538	EntrezGene:LOC100247222	wikigene:LOC100247222	InterPro:MTERF	InterPro:MTERF_sf	PFAM:PF02536
PANTHER:PTHR13068	PANTHER:PTHR13068:SF36	SMART:SM00733	UniParc:UPI000210A72A	ArrayExpress:VIT_01s0010g03740	EnsemblPlantsGene:VIT_01s0010g03740
EnsemblPlants:VIT_01s0010g03740.t01	unigene:Vvi.17660	RefSeq:XP_002271162	RefSeq:XP_002271162.1	:	:

Description

No Description!

Coordinates

chr1:-:21096140..21105781

Molecular Weight (calculated)

36029.1 Da

IEP (calculated)

9.143

GRAVY (calculated)

-0.206

Length

313 amino acids

Sequence
(BLAST)

001: MIIRLQFFPQ TLIPLHSTLS PVKNPNRSPN CTKQSQLLDG FRNSLSPHPN TPISDSGLRF RQKLLYIENL KVNSSKALHK NPNFRSAPLD TVKSVEKCLC
101: SMGIQRSALG RILDMHPQLL TSDPYNDLYP VFDFLFNEVH IPFPDIQKSI IRCPRLLLCS VDDQLRPTFY FLKKLGFAGP HAITCQNTLL LVSSVEDTLV
201: PKLEYLQNLG FSYKEVVKMV VRSPGLLTFS IEKNFQPKVE YFLDEMKGDL AELKRFPQYF SFSLEGKIKP RHRLLAEHGF SLPLPEMLKV SDGEFNLRLI
301: EMRLQLADER YLE

Best Arabidopsis Sequence Match ( AT2G03050.1 )
(BLAST)

001: MIARCSLFPP PCFSAVRIRC FAGETSDTGI LFREKLIYLQ DLNVDPHKAL RVNPSLRSAP ISSVVSVETL LSSTGLSRPA VGRILDMFPD LLTSDPESEI
101: LPVLRFLSNE ISISEQDIPK SISRCPRLLI SSVDYQLRPA LTFLKTLGFV GRDTITSRNT VLLVSNVERT LIPKIEYLEE GLGFTREEVA KMVVRSPALL
201: TYSVDNNLVP KVEFFIEEMR GDVKELKRFP QYFSFSLERK IKPRHRLLKE HGILMPLSEM LKVSDGQFNH WLLELRLRSA ERR

Arabidopsis Description

MTERF1SOLDAT10 [Source:UniProtKB/TrEMBL;Acc:A0A178VYV9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.