Factsheet for VIT_03s0063g02460.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH40190	Soybean	cytosol	24.64	61.82
AT3G18870.1	Thale cress	plastid	58.7	59.12
PGSC0003DMT400001905	Potato	plastid	60.14	59.07
KRH01028	Soybean	plastid	57.25	57.66
Solyc01g109550.2.1	Tomato	mitochondrion	60.51	56.8
CDX99300	Canola	plastid	56.52	56.73
GSMUA_Achr2P08550_001	Banana	plastid	56.16	56.57
CDX92284	Canola	plastid	56.16	56.36
Bra022367.1-P	Field mustard	plastid	55.8	56.0
VIT_01s0010g03740.t01	Wine grape	plastid	35.14	30.99
VIT_10s0003g04040.t01	Wine grape	plastid	35.87	28.12
VIT_08s0007g02500.t01	Wine grape	plastid	32.25	26.33
VIT_03s0038g04180.t01	Wine grape	cytosol, plastid	20.65	16.1
VIT_14s0171g00230.t01	Wine grape	plastid	26.45	14.75
VIT_11s0016g02240.t01	Wine grape	mitochondrion	23.55	13.51
VIT_03s0063g02590.t01	Wine grape	cytosol	25.0	12.13
VIT_09s0054g01030.t01	Wine grape	plastid	25.72	11.81
VIT_19s0090g01770.t01	Wine grape	plastid	21.01	11.53
VIT_07s0104g00720.t01	Wine grape	mitochondrion	21.74	11.43
VIT_16s0098g00970.t01	Wine grape	plastid	23.19	3.17

Protein Annotations

Gene3D:1.25.70.10	EntrezGene:100853221	wikigene:100853221	MapMan:15.6.2.2	ProteinID:CBI32580	ProteinID:CBI32580.3
UniProt:D7TQ07	EMBL:FN596006	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003690
GO:GO:0003723	GO:GO:0003727	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0008380
GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009658	GO:GO:0009987	GO:GO:0016043
GO:GO:0019843	GO:GO:0032502	GO:GO:0042255	InterPro:IPR038538	EntrezGene:LOC100853221	wikigene:LOC100853221
InterPro:MTERF	InterPro:MTERF_sf	PFAM:PF02536	PANTHER:PTHR13068	PANTHER:PTHR13068:SF19	SMART:SM00733
TIGR:TC68340	UniParc:UPI0001982E1C	ArrayExpress:VIT_03s0063g02460	EnsemblPlantsGene:VIT_03s0063g02460	EnsemblPlants:VIT_03s0063g02460.t01	unigene:Vvi.1498
RefSeq:XP_003631646	RefSeq:XP_003631646.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr3:-:5686100..5687065

Molecular Weight (calculated)

31950.8 Da

IEP (calculated)

9.868

GRAVY (calculated)

-0.256

Length

276 amino acids

Sequence
(BLAST)

001: MLHSLHIPTI SSIKSPSSQS LSSSEHPPYL LRFRTSHREN LRYLKTLGII DPSTKPHKFP SPEAVDQVLS TVNFLKSKGF SEPDFPRLSF LCPKLFSSDS
101: DPTDIEPVFD FLTLDLAASD QESCSLILRC PQILLSDVEY CLRPTLLYLR KLGVEKLNVP TSLNAHLLNT RVERLVAKIR FLRSVGLSYE ESARACGRFP
201: AVFGYSIENN LKPKFNYLVR EMKRSVEELK VFPQYFAFSL ENRIMPRHLH LEQRNVRISL KRMLLWSDQK FYAKWK

Best Arabidopsis Sequence Match ( AT3G18870.1 )
(BLAST)

001: MAVIASLHHL QPLSSFSSPP SPSSSKPLYL KFQTSHRENL RHLSSLGIVP QNPRLAPPAN DLSVILSAVN LLKSKGISDE DFPRLVFLCP QLFSPTFDIS
101: KLDPVFDFLT GELGASAEES RGLIVNCPNI LFSDVEYCLR PTLVYLKELG VRNLNRASKT NAHVLNTRVE KLRAKMRFLK SIGFEHEEAA RVCGRIPAIF
201: GYSVEDNLRP KFEFLVYDME RELEELKKFP QYFAFSLGKR IRPRHWHLKK KNVRVSLSRM LMWGDQKFYS KWKP

Arabidopsis Description

At3g18870 [Source:UniProtKB/TrEMBL;Acc:Q9LHN2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.