Factsheet for VIT_08s0007g02500.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
nucleus 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
MultiLoc:	plastid
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400075363	Potato	cytosol	39.65	64.42
KRH43735	Soybean	plastid	56.51	56.51
KRH13722	Soybean	plastid	56.8	56.47
PGSC0003DMT400085903	Potato	plastid	53.25	56.25
Solyc01g007750.2.1	Tomato	plastid	50.59	53.94
AT2G36000.1	Thale cress	plastid	51.78	52.55
Bra017269.1-P	Field mustard	plastid	48.82	49.85
GSMUA_AchrUn_...	Banana	plastid	49.11	49.26
Os03t0360600-00	Rice	cytosol, mitochondrion	34.02	38.21
Zm00001d047442_P001	Maize	plastid	32.84	37.25
KXG39318	Sorghum	plastid	33.43	36.1
TraesCS1A01G084300.1	Wheat	mitochondrion	33.43	35.99
TraesCS4D01G156100.1	Wheat	mitochondrion	33.43	35.99
TraesCS4B01G156500.1	Wheat	mitochondrion	33.14	35.67
Zm00001d029242_P001	Maize	plastid	31.66	35.31
VIT_01s0010g03740.t01	Wine grape	plastid	31.95	34.5
VIT_10s0003g04040.t01	Wine grape	plastid	35.21	33.81
HORVU4Hr1G045210.1	Barley	plastid	33.43	33.33
VIT_03s0063g02460.t01	Wine grape	plastid	26.33	32.25
VIT_03s0038g04180.t01	Wine grape	cytosol, plastid	18.05	17.23
VIT_14s0171g00230.t01	Wine grape	plastid	22.49	15.35
VIT_19s0090g01770.t01	Wine grape	plastid	21.3	14.31
VIT_11s0016g02240.t01	Wine grape	mitochondrion	19.82	13.93
VIT_03s0063g02590.t01	Wine grape	cytosol	22.78	13.53
VIT_09s0054g01030.t01	Wine grape	plastid	23.08	12.98
VIT_07s0104g00720.t01	Wine grape	mitochondrion	19.53	12.57
VIT_16s0098g00970.t01	Wine grape	plastid	20.41	3.42

Protein Annotations

Gene3D:1.25.70.10	EntrezGene:100254596	wikigene:100254596	MapMan:15.6.2.2	EMBL:AM443534	ProteinID:CAN67409
ProteinID:CAN67409.1	ProteinID:CCB55482	ProteinID:CCB55482.1	UniProt:F6HKR0	EMBL:FN595991	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003690	GO:GO:0003723	GO:GO:0003727	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0008380	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536
GO:GO:0009658	GO:GO:0009987	GO:GO:0016043	GO:GO:0019843	GO:GO:0032502	GO:GO:0042255
InterPro:IPR038538	EntrezGene:LOC100254596	wikigene:LOC100254596	InterPro:MTERF	InterPro:MTERF_sf	PFAM:PF02536
PANTHER:PTHR13068	PANTHER:PTHR13068:SF46	SMART:SM00733	UniParc:UPI0002108516	ArrayExpress:VIT_08s0007g02500	EnsemblPlantsGene:VIT_08s0007g02500
EnsemblPlants:VIT_08s0007g02500.t01	RefSeq:XP_002280962	RefSeq:XP_002280962.2	SEG:seg	:	:

Description

No Description!

Coordinates

chr8:+:16616945..16618303

Molecular Weight (calculated)

38736.2 Da

IEP (calculated)

8.380

GRAVY (calculated)

-0.183

Length

338 amino acids

Sequence
(BLAST)

001: MQETIHLSSK HSSFPKSHVL HSHHDFSTLS RPRIIHFPIL SSKTSITIPP KPSKSPELPS ISPPSSPDPP DPHSQFEEKM LYLDSIGLDL FSLINDHPPI
101: VCASLDDIKS TVDFLYSMGF TALEFCRICG MCPEILNSRV SDIVPVFTFL LREARVDGSD LRRVVNRRPR LLACNVKNRL RPTLYFLQSI GISEVNKHTN
201: LLSCSVEEKL IPRIDYLEKI GFSKRDAVSM VRRFPQLFNH SIKDNLEPKF NYFVVEMGRE LRELKEFPQY FSFSLENRIK PRHQCCVEKG VCFPLPIMLK
301: TTEAKFHGRL EVCCNSSGPL RTSPLWCTNC DFNLMLVI

Best Arabidopsis Sequence Match ( AT2G36000.1 )
(BLAST)

001: MQQEALSFLS SSLPSLHHNF PSLSRLRFNN FPALSFKPNT SSSSSSFFKS PDIPSLSSTT TTTTTTETLE SSIHEKLIYL DSLGIDFLTL INRHPPLLST
101: ALSAVESVVD YMTTPPINFT LQDFRRLVSM CPELLTSPLT SHTIPVITFL LREVGVDSIF DLRQALRRRP RLLACSVDHQ LRPTLYFLQR IGILDPHKHT
201: YLLSCSVDNK LVPRIDYFEK LGFSRRSATA MFKRFPQLFN YSIAENYEPK LKYLMVEMGR DVREVLEFPQ YFSFSLENRI KPRHEACAAK GVRFPLPVML
301: KTNEAGFRDT LEVCCDSSPP LKTSRLVTVQ KDS

Arabidopsis Description

At2g36000/F11F19.9 [Source:UniProtKB/TrEMBL;Acc:Q9SJ50]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.