Factsheet for VIT_03s0063g02590.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 3
cytosol 2
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH24469	Soybean	plastid	67.49	61.54
TraesCS2A01G255200.1	Wheat	cytosol	49.74	61.12
CDY66820	Canola	plastid	63.62	58.2
Bra031213.1-P	Field mustard	plastid	63.8	57.89
CDY13794	Canola	plastid	63.62	57.74
KRH29455	Soybean	mitochondrion	56.06	56.16
AT2G21710.1	Thale cress	plastid	62.39	55.38
PGSC0003DMT400001916	Potato	plastid	65.03	53.7
TraesCS2D01G255600.1	Wheat	mitochondrion	56.24	52.89
OQU88410	Sorghum	plastid	55.89	52.82
TraesCS2B01G267000.1	Wheat	mitochondrion	56.06	52.64
Os07t0134700-00	Rice	plastid	55.71	52.14
Solyc01g109630.2.1	Tomato	mitochondrion	64.5	52.06
Zm00001d018756_P001	Maize	plastid	55.71	51.8
GSMUA_Achr4P23060_001	Banana	mitochondrion	60.81	49.57
VIT_03s0063g02460.t01	Wine grape	plastid	12.13	25.0
VIT_01s0010g03740.t01	Wine grape	plastid	13.36	24.28
VIT_08s0007g02500.t01	Wine grape	plastid	13.53	22.78
VIT_10s0003g04040.t01	Wine grape	plastid	14.06	22.73
VIT_03s0038g04180.t01	Wine grape	cytosol, plastid	12.83	20.62
VIT_11s0016g02240.t01	Wine grape	mitochondrion	17.22	20.37
VIT_09s0054g01030.t01	Wine grape	plastid	19.68	18.64
VIT_07s0104g00720.t01	Wine grape	mitochondrion	16.87	18.29
VIT_14s0171g00230.t01	Wine grape	plastid	15.82	18.18
VIT_19s0090g01770.t01	Wine grape	plastid	13.36	15.11
VIT_16s0098g00970.t01	Wine grape	plastid	16.52	4.66

Protein Annotations

Gene3D:1.25.70.10	EntrezGene:100852464	wikigene:100852464	MapMan:15.6.2.2	ProteinID:CCB56980	ProteinID:CCB56980.1
UniProt:F6HQM3	EMBL:FN596006	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003690
GO:GO:0003723	GO:GO:0003727	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0008380
GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009658	GO:GO:0009987	GO:GO:0016043
GO:GO:0019843	GO:GO:0032502	GO:GO:0042255	InterPro:IPR038538	EntrezGene:LOC100852464	wikigene:LOC100852464
InterPro:MTERF	InterPro:MTERF_sf	PFAM:PF02536	PANTHER:PTHR13068	PANTHER:PTHR13068:SF4	SMART:SM00733
UniParc:UPI0002108030	ArrayExpress:VIT_03s0063g02590	EnsemblPlantsGene:VIT_03s0063g02590	EnsemblPlants:VIT_03s0063g02590.t01	RefSeq:XP_003631610	RefSeq:XP_003631610.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr3:-:5802713..5806849

Molecular Weight (calculated)

65751.4 Da

IEP (calculated)

8.630

GRAVY (calculated)

-0.176

Length

569 amino acids

Sequence
(BLAST)

001: MSLVTKRTPQ FPGSIYIQPS QSETSKPPLA KLFNGESDED DDEMIMRALE IRRNVTVEIF KEAMRKGKFG ITYSNNLVSR LPDFIDYVMI EAASMKQLPE
101: FSHSTFNTRA KTVIHDSNVV PLIRWLKHNS LSYPRIGKLI CMSMGNLETI RGLVEWLKTI HVRGEFLGFV IMKAGGDILE RSIEELDDIV RYLENNGVRR
201: DWMGNVMSRC PQLLSYSIEE VKTRVGFYLD MGMNEKDFGT MVFDYPKALG YFTLEEMNEK VSYLKEFGLN NEDVGRLLAF KPQLMGCSIE ERWKPFVKYL
301: YYLGVCREGM RRMLIIKPMV FCVDLEKTIV PKVRFFQDIG IRDDAIGNML VKFPPLLTYS LYKKIRPVVI FLITKAGVSR KDIAKVIALG PELLGCSIVH
401: KLEVNVKYFL SLGIPLQILG EMIADFPMLL RYNIDVLRPK YRYLRRTMVR PLKDLIEFPR FFSYSLDDRI IPRHKALVEN RVNFKLRYML AISDEEFARR
501: VEAAVERRSR FESGLMSSTL SDSQTTNDSL ENRTLVDFCG REVAFSECQT SENQVSSSKN EDAQSFSSE

Best Arabidopsis Sequence Match ( AT2G21710.1 )
(BLAST)

001: MLLHCNVSYY TSTFSFISSS LRRQDNADDS QDTVIRRRHN ARSISLYIRH NRDLKLNKNP NESQETFVPP PPPPRRDLDG ENRSKLLELS LVTRRTPQFP
101: GSIYAQSASD ADIASSLPSL RNFLGSDGDD DGESEREMIV KALEIRRKVT KEIIKESLVR KGRFGITYAT NVTDRLGDFV DHVMIQAAAL KRLPEFSESR
201: FNLRARTVIE DSNFVPLVRW LKHHELSYNR IAKIICMSKG NLDSIRIMIE WLKSIHVKGE FIAVAFLRSG DNILQRNREE LNEIVEYLES NGVRRDWMGY
301: VVGRCPELLS FSMEEVKSRV DFFLKMGMNQ NDFGTMVYDY PKIIGFFSFQ VMEKKINYLK EFGLSTEEVG RLLAYKPHLM GCSIEERWKP LVKYFYYLGI
401: PKEGMKRILV VKPILYCIDL EKTIAPKVRF LQEMGIPNEA IGNMLVKFPS LLTNSLYKKI RPVVIFLLTR AGVTQKDIGK VIAMDPALLG CSIGTKLEPN
501: MRYYISLGIR FYQLGEMIAD FPMLLRYNVD NLRPKYRYLR RTMIRPLQDL IEFPRFFSYS LERRIIPRHT IMVENRVNFK LRYMLACTDE EFERRVRDKV
601: ERRERFEAGL DSEDSQPSDE NISDQEIAFS DEAEEEEDLT E

Arabidopsis Description

MTERF2Transcription termination factor MTERF2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:F4IHL3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.