Factsheet for PGSC0003DMT400001916

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g109630.2.1	Tomato	mitochondrion	94.48	92.34
VIT_03s0063g02590.t01	Wine grape	cytosol	53.7	65.03
KRH24469	Soybean	plastid	53.85	59.46
CDY66820	Canola	plastid	52.25	57.88
Bra031213.1-P	Field mustard	plastid	52.25	57.42
TraesCS2A01G255200.1	Wheat	cytosol	38.46	57.24
CDY13794	Canola	plastid	51.81	56.94
AT2G21710.1	Thale cress	plastid	52.83	56.79
KRH29455	Soybean	mitochondrion	44.85	54.4
OQU88410	Sorghum	plastid	46.3	52.99
Zm00001d018756_P001	Maize	plastid	46.3	52.12
TraesCS2D01G255600.1	Wheat	mitochondrion	44.85	51.07
Os07t0134700-00	Rice	plastid	44.99	50.99
TraesCS2B01G267000.1	Wheat	mitochondrion	44.56	50.66
GSMUA_Achr4P23060_001	Banana	mitochondrion	49.93	49.28
PGSC0003DMT400047490	Potato	mitochondrion	4.79	35.11
PGSC0003DMT400075363	Potato	cytosol	9.58	31.73
PGSC0003DMT400085903	Potato	plastid	13.06	28.12
PGSC0003DMT400080487	Potato	plastid	11.47	25.48
PGSC0003DMT400047424	Potato	plastid	11.18	24.21
PGSC0003DMT400059549	Potato	cytosol	11.18	23.48
PGSC0003DMT400076662	Potato	cytosol	9.43	22.26
PGSC0003DMT400001905	Potato	plastid	8.85	21.71
PGSC0003DMT400007420	Potato	mitochondrion	13.93	20.13
PGSC0003DMT400023814	Potato	mitochondrion	13.79	19.31
PGSC0003DMT400052092	Potato	mitochondrion	13.21	18.8
PGSC0003DMT400023772	Potato	plastid	16.11	18.59
PGSC0003DMT400001588	Potato	plastid	12.05	16.02

Protein Annotations

Gene3D:1.25.70.10	EntrezGene:102586135	MapMan:15.6.2.2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003690	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009506
GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	InterPro:IPR038538	UniProt:M0ZJB4	InterPro:MTERF
InterPro:MTERF_sf	PFAM:PF02536	EnsemblPlantsGene:PGSC0003DMG400000727	PGSC:PGSC0003DMG400000727	EnsemblPlants:PGSC0003DMT400001916	PANTHER:PTHR13068
PANTHER:PTHR13068:SF4	SMART:SM00733	UniParc:UPI000296C82F	RefSeq:XP_006365103.1	SEG:seg	:

Description

EMB2219 [Source:PGSC_GENE;Acc:PGSC0003DMG400000727]

Coordinates

chr1:-:85937523..85941074

Molecular Weight (calculated)

79795.8 Da

IEP (calculated)

7.987

GRAVY (calculated)

-0.290

Length

689 amino acids

Sequence
(BLAST)

001: MLCELHHHNF FFTPQSINQQ HQTTLPTIVC FSPKRRRSFT IFSTHHPHQQ PHLKNQETDT NTTTSSNDEK GITRKHNSKS SAVLLRYLKQ EEYQEPLTGS
101: AEPEKQDCAV LEEDKEKVLE MSLIRKRTPQ FPGSLYVQSP TDADVNTSLP PISSLFDSKK GSGFDDDEML IKALEIRRKV TVEIFKEAMR KGRFSITYST
201: NLVSELPDFI DYVMIQAASM KQMPEFLGSS FNVRARAFID DSGVVPIVRW LKHNELSYPH IANLICKSRG DLESIRRLAE WLKSIHVKGR FIGLVMIRAK
301: GNVLGRSLEE LDEIVGYLEY KGVKRDWIGY IVGRCPEILS FSMEELESHT NFYFDMGMDE KDFGTMVFDY PKVLGYFSME EMNQKVAYLK EFGLSNEDVG
401: RLLSFKPHLM GCGIEEKFKP LVKYFYYLGI SKDGMRKILV TRPVLFCVDF ETTIVPKVQF LRDIGVQQDA IGNVLVRFPR LLTFSLYKKI RPVVIFLLTK
501: AGVSQRNIGK VIALGPELLG CSIANKLDHN VKYFLSLGIT LRQLGEMVAD FPMLLTYNID ILRPKYRYLR RMMVRPLQDL IEFPRFFSYS LDDRIIPRHK
601: IMVENRVNFK LRYMLSSTDD EFKQRVEAAV ERRLRFESGV IYDKQEHTEI DGSIEMLPFD FQTTEILEEK TDLCSDYKDL PTVHIQNSA

Best Arabidopsis Sequence Match ( AT2G21710.1 )
(BLAST)

001: MLLHCNVSYY TSTFSFISSS LRRQDNADDS QDTVIRRRHN ARSISLYIRH NRDLKLNKNP NESQETFVPP PPPPRRDLDG ENRSKLLELS LVTRRTPQFP
101: GSIYAQSASD ADIASSLPSL RNFLGSDGDD DGESEREMIV KALEIRRKVT KEIIKESLVR KGRFGITYAT NVTDRLGDFV DHVMIQAAAL KRLPEFSESR
201: FNLRARTVIE DSNFVPLVRW LKHHELSYNR IAKIICMSKG NLDSIRIMIE WLKSIHVKGE FIAVAFLRSG DNILQRNREE LNEIVEYLES NGVRRDWMGY
301: VVGRCPELLS FSMEEVKSRV DFFLKMGMNQ NDFGTMVYDY PKIIGFFSFQ VMEKKINYLK EFGLSTEEVG RLLAYKPHLM GCSIEERWKP LVKYFYYLGI
401: PKEGMKRILV VKPILYCIDL EKTIAPKVRF LQEMGIPNEA IGNMLVKFPS LLTNSLYKKI RPVVIFLLTR AGVTQKDIGK VIAMDPALLG CSIGTKLEPN
501: MRYYISLGIR FYQLGEMIAD FPMLLRYNVD NLRPKYRYLR RTMIRPLQDL IEFPRFFSYS LERRIIPRHT IMVENRVNFK LRYMLACTDE EFERRVRDKV
601: ERRERFEAGL DSEDSQPSDE NISDQEIAFS DEAEEEEDLT E

Arabidopsis Description

MTERF2Transcription termination factor MTERF2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:F4IHL3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.