Factsheet for PGSC0003DMT400047424

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1
plasma membrane 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400047490	Potato	mitochondrion	29.56	100.0
Solyc05g007840.2.1	Tomato	plastid	92.14	89.33
VIT_01s0010g03740.t01	Wine grape	plastid	63.52	64.54
KRH74890	Soybean	cytosol, plasma membrane, plastid	48.11	57.74
AT2G03050.2	Thale cress	cytosol, golgi, mitochondrion, plastid	49.37	55.28
Bra024793.1-P	Field mustard	extracellular	49.06	54.93
CDY03022	Canola	extracellular	49.06	54.93
CDY45184	Canola	extracellular, mitochondrion	49.06	54.74
KRH70749	Soybean	plastid	50.0	53.9
GSMUA_Achr5P23270_001	Banana	mitochondrion	50.0	51.46
PGSC0003DMT400080487	Potato	plastid	40.57	41.61
GSMUA_Achr6P02570_001	Banana	plastid	31.45	41.49
PGSC0003DMT400075363	Potato	cytosol	24.53	37.5
PGSC0003DMT400085903	Potato	plastid	30.5	30.31
PGSC0003DMT400001905	Potato	plastid	26.1	29.54
PGSC0003DMT400076662	Potato	cytosol	19.81	21.58
PGSC0003DMT400059549	Potato	cytosol	18.55	17.99
PGSC0003DMT400052092	Potato	mitochondrion	26.73	17.56
PGSC0003DMT400001588	Potato	plastid	22.33	13.71
PGSC0003DMT400007420	Potato	mitochondrion	20.44	13.63
PGSC0003DMT400023814	Potato	mitochondrion	20.44	13.21
PGSC0003DMT400023772	Potato	plastid	22.33	11.89
PGSC0003DMT400001916	Potato	plastid	24.21	11.18

Protein Annotations

Gene3D:1.25.70.10	EntrezGene:102605440	MapMan:15.6.2.2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003690	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR038538	UniProt:M1BKQ9	InterPro:MTERF	InterPro:MTERF_sf
PFAM:PF02536	EnsemblPlantsGene:PGSC0003DMG400018430	PGSC:PGSC0003DMG400018430	EnsemblPlants:PGSC0003DMT400047424	PANTHER:PTHR13068	PANTHER:PTHR13068:SF36
SMART:SM00733	UniParc:UPI0002967DEC	RefSeq:XP_006355115.1	SEG:seg	:	:

Description

MTERF domain containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400018430]

Coordinates

chr5:-:4620155..4621397

Molecular Weight (calculated)

36493.0 Da

IEP (calculated)

8.787

GRAVY (calculated)

-0.022

Length

318 amino acids

Sequence
(BLAST)

001: MSLLLPEMLT WINPPKTLIP FSSITPKPSS PSPICSISPK PTKTSLKSLH LSPQPTLTST DCGLKFREKI LYLQDLNINP TKVLQLNPHL RSATLDSIRS
101: VEICLFSMGI ERSAIGRILD MHPQLLTSDP YIHLYPIFDF LLNDVVIPFH DIRKSIIRCP RILVCSVEDQ LKPTFEFLKE FGFVGQNRIT CQTTVLLVSS
201: VELTLNPKID YMLSLGFERD DVVNMVLRSP GLLTFSIEKN FRPKVEYFLK EMNGDIGELK RFPQYFSFSL ERKIKPRHRL LVEHGFSLSL SEMLKVSDGE
301: FNARLIEMRL RIVEDKQL

Best Arabidopsis Sequence Match ( AT2G03050.2 )
(BLAST)

001: MMIARCSLFP PPCFSAVRIR CFAGETSDTG ILFREKLIYL QDLNVDPHKA LRVNPSLRSA PISSVVSVET LLSSTGLSRP AVGRILDMFP DLLTSDPESE
101: ILPVLRFLSN EISISEQDIP KSISRCPRLL ISSVDYQLRP ALTFLKTLGF VGRDTITSRN TVLLVSNVER TLIPKIEYLE EGLGFTREEV AKMVVRSPAL
201: LTYSVDNNLV PKVEFFIEEM RGDVKELKRF PQYFSFSLER KIKPRHRLLK EHGILMPLSE MLKVSDGQFN HWLLELRLRS AERR

Arabidopsis Description

MTERF1SOLDAT10 [Source:UniProtKB/TrEMBL;Acc:A0A178VYV9]
SUBAcon: [mitochondrion,golgi,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.