Factsheet for Solyc05g007840.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400047424	Potato	plastid	89.33	92.14
PGSC0003DMT400047490	Potato	mitochondrion	25.91	90.43
VIT_01s0010g03740.t01	Wine grape	plastid	60.98	63.9
KRH74890	Soybean	cytosol, plasma membrane, plastid	46.65	57.74
AT2G03050.2	Thale cress	cytosol, golgi, mitochondrion, plastid	47.26	54.58
Bra024793.1-P	Field mustard	extracellular	46.65	53.87
CDY03022	Canola	extracellular	46.65	53.87
CDY45184	Canola	extracellular, mitochondrion	46.65	53.68
KRH70749	Soybean	plastid	47.56	52.88
GSMUA_Achr5P23270_001	Banana	mitochondrion	47.56	50.49
GSMUA_Achr6P02570_001	Banana	plastid	30.49	41.49
Solyc02g021430.1.1	Tomato	plastid	38.11	40.85
Solyc01g007750.2.1	Tomato	plastid	28.96	29.97
Solyc01g109550.2.1	Tomato	mitochondrion	24.7	27.55
Solyc11g044360.1.1	Tomato	cytosol	17.68	18.3
Solyc02g093940.2.1	Tomato	nucleus	26.83	18.18
Solyc12g015640.1.1	Tomato	plastid	21.65	14.73
Solyc11g017050.1.1	Tomato	extracellular	19.82	13.05
Solyc03g124040.2.1	Tomato	golgi, plastid	22.56	12.89
Solyc03g081300.2.1	Tomato	plastid	18.9	12.6
Solyc04g005630.2.1	Tomato	nucleus	20.12	12.22
Solyc01g109630.2.1	Tomato	mitochondrion	22.87	10.64

Protein Annotations

Gene3D:1.25.70.10	MapMan:15.6.2.2	GO:GO:0000003	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003690	GO:GO:0003723	GO:GO:0003727	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0008380	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009658
GO:GO:0009790	GO:GO:0009791	GO:GO:0009793	GO:GO:0009987	GO:GO:0016043	GO:GO:0019843
GO:GO:0032502	GO:GO:0042255	InterPro:IPR038538	UniProt:K4BWV9	InterPro:MTERF	InterPro:MTERF_sf
PFAM:PF02536	PANTHER:PTHR13068	PANTHER:PTHR13068:SF36	SMART:SM00733	EnsemblPlantsGene:Solyc05g007840.2	EnsemblPlants:Solyc05g007840.2.1
UniParc:UPI0002765EB9	SEG:seg	:	:	:	:

Description

Transcription termination factor MTEF1, chloroplastic [Source:Projected from Arabidopsis thaliana (AT2G03050) UniProtKB/Swiss-Prot;Acc:Q84X53]

Coordinates

chr5:+:2288417..2291474

Molecular Weight (calculated)

37491.3 Da

IEP (calculated)

8.909

GRAVY (calculated)

0.079

Length

328 amino acids

Sequence
(BLAST)

001: MLTWINPPKT LIPFSSIIPN PSSPIPICSI SPKPTKTSLK SLHLSPQHTL TSTDCGLKFR EKILYLQELN INPSKVLQLN PHLRSATLDS IRSVEVCLFS
101: MGIERSAIGR ILDMHPQLLT SDPYIHLYPI FDFLLNDVVI PFHDIRKSII RCPRILVCSV EDQLKPTFEF LKEFGFVGQN RITCQTTVLL VSSVELTLNP
201: KIDYMLSLGF ELDDVANMVL RSPGLLTFSI EKNFRPKVEY FLKEMNGDIR ELKRFPQYFS FSLERKIKPR HRLLVEHGFT LSLSEMLKVS DGEFNARLIE
301: MRLRLIKANV NTSFHVSSGT CLILLSCI

Best Arabidopsis Sequence Match ( AT2G03050.2 )
(BLAST)

001: MMIARCSLFP PPCFSAVRIR CFAGETSDTG ILFREKLIYL QDLNVDPHKA LRVNPSLRSA PISSVVSVET LLSSTGLSRP AVGRILDMFP DLLTSDPESE
101: ILPVLRFLSN EISISEQDIP KSISRCPRLL ISSVDYQLRP ALTFLKTLGF VGRDTITSRN TVLLVSNVER TLIPKIEYLE EGLGFTREEV AKMVVRSPAL
201: LTYSVDNNLV PKVEFFIEEM RGDVKELKRF PQYFSFSLER KIKPRHRLLK EHGILMPLSE MLKVSDGQFN HWLLELRLRS AERR

Arabidopsis Description

MTERF1SOLDAT10 [Source:UniProtKB/TrEMBL;Acc:A0A178VYV9]
SUBAcon: [mitochondrion,golgi,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.