Factsheet for Solyc02g093940.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 4
mitochondrion 5
golgi 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400052092	Potato	mitochondrion	97.31	97.31
VIT_14s0171g00230.t01	Wine grape	plastid	69.42	67.88
KRH39012	Soybean	cytosol	61.78	66.89
KRH57654	Soybean	mitochondrion, plastid	65.29	65.83
KRG94311	Soybean	plastid	64.05	65.54
CDY29749	Canola	cytosol	60.54	59.8
Bra036876.1-P	Field mustard	cytosol	60.74	59.63
CDY16267	Canola	cytosol	59.71	59.59
AT4G14605.2	Thale cress	cytosol	59.92	58.82
GSMUA_Achr3P02690_001	Banana	plastid	58.47	54.63
TraesCS6B01G244200.1	Wheat	plastid	51.86	51.86
TraesCS6A01G214200.1	Wheat	plastid	51.86	51.86
KXG30576	Sorghum	cytosol	52.69	51.83
TraesCS6D01G196900.1	Wheat	plastid	51.86	51.75
Zm00001d017130_P001	Maize	plastid	51.45	51.23
HORVU6Hr1G054650.2	Barley	plastid	51.45	51.23
Solyc05g007840.2.1	Tomato	plastid	18.18	26.83
Solyc02g021430.1.1	Tomato	plastid	16.74	26.47
Solyc11g044360.1.1	Tomato	cytosol	16.94	25.87
Solyc01g007750.2.1	Tomato	plastid	16.74	25.55
Solyc01g109550.2.1	Tomato	mitochondrion	12.81	21.09
Solyc11g017050.1.1	Tomato	extracellular	18.18	17.67
Solyc03g124040.2.1	Tomato	golgi, plastid	19.21	16.2
Solyc12g015640.1.1	Tomato	plastid	15.91	15.98
Solyc03g081300.2.1	Tomato	plastid	16.12	15.85
Solyc04g005630.2.1	Tomato	nucleus	15.29	13.7
Solyc01g109630.2.1	Tomato	mitochondrion	18.18	12.48

Protein Annotations

Gene3D:1.25.70.10	MapMan:15.6.2.2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003690
GO:GO:0003723	GO:GO:0003727	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0008380
GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009658	GO:GO:0009987	GO:GO:0016043
GO:GO:0019843	GO:GO:0032502	GO:GO:0042255	InterPro:IPR038538	UniProt:K4BDJ0	InterPro:MTERF
InterPro:MTERF_sf	PFAM:PF02536	PANTHER:PTHR13068	PANTHER:PTHR13068:SF9	SMART:SM00733	EnsemblPlantsGene:Solyc02g093940.2
EnsemblPlants:Solyc02g093940.2.1	UniParc:UPI00027688CD	SEG:seg	:	:	:

Description

Transcription termination factor MTERF5, chloroplastic [Source:Projected from Arabidopsis thaliana (AT4G14605) UniProtKB/Swiss-Prot;Acc:F4JVI3]

Coordinates

chr2:-:54624361..54627310

Molecular Weight (calculated)

54800.4 Da

IEP (calculated)

9.501

GRAVY (calculated)

0.052

Length

484 amino acids

Sequence
(BLAST)

001: MTSFMQLRIP NAKLAFFSRT SRVPLYRIVL SFPQKVFFCT AKYSESEVDG SFSLRLVPPT LVAAEKEEAK AVLTLFLKKQ GLSNALAARA INRSESFIEH
101: LVSRLHSVHK SRYLVGRELT TLEIRDALIP YLEALHEEYG SILVDVVESF PNPPVVEKIE ETVEKVPIPV TPASPPSAVL DSKKLKALAR VTDIGPTGKL
201: PPHILYLVEL GMDIERIRVI TRKFPAFAYY SLEGKIKPVV EFLLDLGVPR SQIPTILSKR PQLCGISLSD NLIPTMTFLE ELGVDKEQWA KVIYRFPALL
301: TYSRPKLKAT VDFLYEMGLS AECVSKVLTR CPNIISYSVE DKLRPATEYF RSMGVDVGVL LYRCPQTFGL SIEANIKPAT EFFKDKGFSM TEIATMVSRY
401: GALYTFSFAK LVLKWEFFLT MGYPRTELVK FPQYFGYSLE ERIKPRLAIM TDKGVRLLLN QMLSLSEDAF NKALEKKLQK LIDS

Best Arabidopsis Sequence Match ( AT4G14605.2 )
(BLAST)

001: MQSLSQLGPS EIFLVARREK PSTRAQLWFT GRLSFRQETN GIRLKNRVEF SPRPVPPNLI AAEKEEAKAV LTLFFKKQGL SNSLSSRLIN KSDLFIDHLV
101: SRLHSVHKAR YLVGRELTTL EIRDSLIPYL EQLHEEHGDL LAELVVSFPD PPAEPRLVAS SPVSVLPPRG DTDSAADTRK LRAVSRVSEL DTEGALRPQT
201: LYLLDLGLNL EQIKTITRKF AAFPYYSLDG KIKPVVEFLL DLGIPKSDIP TILCKRPQIC GISLTDNLKP TMAFLETLGI DKNQWAKIIS RFPAILTYSR
301: QKLTSTVEFL SQTGLTEEQI GRILTRCPNI MSYSVEDKLR PTMEYFRSLN VDVAVLLHRC PQTFGLSIES NLKPVTEFFL EKGFGLDEIG IMISRYGALY
401: TFSLKENVMP KWDYFQTMDY PKSELVKFPQ FFGYSLQERI KPRYELVQRS GVRLLLNQVL SLSGIEFEKV VKKKMMKLVS NNVIAEQSSG GLL

Arabidopsis Description

MTERF5Transcription termination factor MTERF5, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:F4JVI3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.