Factsheet for Bra036876.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 4
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY29749	Canola	cytosol	96.96	97.55
CDY16267	Canola	cytosol	95.13	96.7
AT4G14605.2	Thale cress	cytosol	88.44	88.44
KRH39012	Soybean	cytosol	58.62	64.65
KRH57654	Soybean	mitochondrion, plastid	61.87	63.54
KRG94311	Soybean	plastid	60.65	63.21
VIT_14s0171g00230.t01	Wine grape	plastid	62.27	62.02
PGSC0003DMT400052092	Potato	mitochondrion	60.04	61.16
Solyc02g093940.2.1	Tomato	nucleus	59.63	60.74
GSMUA_Achr3P02690_001	Banana	plastid	57.2	54.44
TraesCS6B01G244200.1	Wheat	plastid	49.29	50.21
TraesCS6A01G214200.1	Wheat	plastid	49.29	50.21
TraesCS6D01G196900.1	Wheat	plastid	49.29	50.1
HORVU6Hr1G054650.2	Barley	plastid	48.88	49.59
KXG30576	Sorghum	cytosol	49.09	49.19
Zm00001d017130_P001	Maize	plastid	47.67	48.35
Bra024793.1-P	Field mustard	extracellular	15.82	27.46
Bra012812.1-P	Field mustard	cytosol	17.65	25.97
Bra022367.1-P	Field mustard	plastid	14.2	25.45
Bra017269.1-P	Field mustard	plastid	15.01	22.36
Bra003005.1-P	Field mustard	plastid	19.07	18.84
Bra028970.1-P	Field mustard	plastid	16.84	16.87
Bra004800.1-P	Field mustard	cytosol	15.01	16.55
Bra031213.1-P	Field mustard	plastid	18.86	14.83
Bra036228.1-P	Field mustard	golgi, mitochondrion, plastid	15.21	14.12

Protein Annotations

Gene3D:1.25.70.10	MapMan:15.6.2.2	EnsemblPlantsGene:Bra036876	EnsemblPlants:Bra036876.1	EnsemblPlants:Bra036876.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003690	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355
GO:GO:0006950	GO:GO:0006970	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009628
GO:GO:0009651	GO:GO:0009658	GO:GO:0009719	GO:GO:0009737	GO:GO:0009987	GO:GO:0016043
InterPro:IPR038538	UniProt:M4F716	InterPro:MTERF	InterPro:MTERF_sf	PFAM:PF02536	PANTHER:PTHR13068
PANTHER:PTHR13068:SF9	SMART:SM00733	UniParc:UPI00025451D7	SEG:seg	:	:

Description

AT4G14605 (E=9e-235) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: EMB2219 (embryo defective 2219) (TAIR:AT2G21710.1); Has 760 Blast hits to 374 proteins in 45 species: Archae - 0; Bacteria - 0; Metazoa - 99; Fungi - 0; Plants - 624; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink).

Coordinates

chrA01:-:12471653..12473344

Molecular Weight (calculated)

56430.8 Da

IEP (calculated)

9.456

GRAVY (calculated)

-0.205

Length

493 amino acids

Sequence
(BLAST)

001: MQTFSQLGPS EIFFIARRDN PCTSNCRAQL WFTGKLHFRQ ESFGFRIKNR VEYSARPVPP NLIAAEKEEA KAVLTLFFKK QGLSNSVSVR IINKSDLFID
101: HLVSRLHSVH KARYLVGREL TTLEIRDSLI PYLEQLHEQH GDLLSDLVVS FPDPPPPHAE DRPPPVPLTP PRGLTDSAAD SKKLRAVSRV SELDTEGALR
201: PQTLYLLDLG LNLEQIKTIT RKFAAFPYYS LEGKIKPVVE FLLDLGIPKS DIPTILCKRP QICGISLTDN LKPTMAFLET LGIDKNQWAK IIYRFPAILT
301: YSRQKLISTV EFLTQTGLSE EQIGKILTRC PNIMSYSVED KLRPTMEYFK SLNVDVAVLL HRCPQTFGLS IETNLKPVTE FFLEKGYGID EIGIMISRYG
401: ALYTFSLREN LMPKWDYFQT MDYPKSELVK FPQFFGYSLQ ERIKPRYELV KRSGVRLLLN QVLSLSGVEF EKVVKKKMMK KLLSDHQSSS ELL

Best Arabidopsis Sequence Match ( AT4G14605.2 )
(BLAST)

001: MQSLSQLGPS EIFLVARREK PSTRAQLWFT GRLSFRQETN GIRLKNRVEF SPRPVPPNLI AAEKEEAKAV LTLFFKKQGL SNSLSSRLIN KSDLFIDHLV
101: SRLHSVHKAR YLVGRELTTL EIRDSLIPYL EQLHEEHGDL LAELVVSFPD PPAEPRLVAS SPVSVLPPRG DTDSAADTRK LRAVSRVSEL DTEGALRPQT
201: LYLLDLGLNL EQIKTITRKF AAFPYYSLDG KIKPVVEFLL DLGIPKSDIP TILCKRPQIC GISLTDNLKP TMAFLETLGI DKNQWAKIIS RFPAILTYSR
301: QKLTSTVEFL SQTGLTEEQI GRILTRCPNI MSYSVEDKLR PTMEYFRSLN VDVAVLLHRC PQTFGLSIES NLKPVTEFFL EKGFGLDEIG IMISRYGALY
401: TFSLKENVMP KWDYFQTMDY PKSELVKFPQ FFGYSLQERI KPRYELVQRS GVRLLLNQVL SLSGIEFEKV VKKKMMKLVS NNVIAEQSSG GLL

Arabidopsis Description

MTERF5Transcription termination factor MTERF5, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:F4JVI3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.